# Generated by roxygen2: do not edit by hand

export(AnalyzeOrthoMCL)
export(CalculatePrincipalCoordinates)
export(FormatAfterOrtho)
export(FormatMCLFastas)
export(JoinRepSeq)
export(ManhatGrp)
export(PDGPlot)
export(PDGvOG)
export(PhyDataError)
export(PrintOGSeqs)
export(QQPlotter)
export(RASTtoGBK)
export(SurvAppendMatrix)
export(WriteMCL)
import(seqinr)
importFrom(ape,.PlotPhyloEnv)
importFrom(foreach,"%dopar%")
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(multcomp,glht)
importFrom(multcomp,mcp)
importFrom(plyr,.)
importFrom(plyr,as.quoted)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,na.omit)
importFrom(stats,ppoints)
importFrom(stats,prcomp)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,read.csv)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(utils,write.table)
