AR1                     Correlation matrix of an autoregressive model
                        of order 1
CovMat                  Calculation of covariance or correlation matrix
CovarMatrix             Calculation of covariance matrices from
                        maternal and paternal LD
ExpectMat               Expected value of paternally inherited allele
H.sire                  testdata: sire haplotypes
Haplo2Geno              Conversion of haplotypes into genotypes
LDdam                   Calculation of maternal LD matrix
LDsire                  Calculation of paternal LD matrix
calcvar                 Variance of estimator
coeff.beta.k            Ratio of expected value to variance of
                        estimator
matLD                   testdata: maternal linkage disequilibrium
pos.chr                 testdata: genetic map positions
pwr.normtest            Probability under alternative hypothesis
                        (power)
pwr.snpblup             Wrapper function for sample size calculation
search.best.n.bisection
                        Method of bisection for estimating optimal
                        sample size
simpleM                 Calculation of effective number of independent
                        tests
startvalue              Start value for estimating optimal sample size
tagSNP                  tagSNP
testdata                Description of the testdata
