BevertonHolt            Beverton-Holt settler-recruit relationship
ConnMatTools            Tools for working with connectivity matrices
DPRHomerangeGravity     Extended DPR population dynamics model to
                        include homerange movement
DispersalPerRecruitModel
                        Population dynamics model based on
                        lifetime-egg-production
betasVectorDefault      Compute vector of beta values
chile.loco              Connectivity matrix for loco (Concholepas
                        concholepas) from Chile
d.mix.dists.func        Returns probability density function (PDF) for
                        a mix of marked and unmarked individuals
d.rel.conn.beta.prior   Estimate the probability distribution of
                        relative connectivity values assuming a
                        Beta-distributed prior
d.rel.conn.dists.func   Functions for estimating the probability
                        distribution for relative connectivity given a
                        pair of distributions for scores for marked and
                        unmarked individuals
d.rel.conn.finite.settlement
                        Estimate the probability distribution for the
                        number of settlers originating at a site given
                        a sample from a finite settler pool
d.rel.conn.multinomial.unnorm
                        Calculates unnormalized probability density for
                        relative connectivity values from multiple
                        distinct sites
d.rel.conn.multiple     Functions for estimating the probability
                        distribution of relative connectivity values as
                        a weighted sum over possible input parameters
d.rel.conn.unif.prior   Estimate the probability distribution of
                        relative connectivity values assuming a uniform
                        prior distribution
damselfish.lods         Sample LOD score data for simulated and real
                        parent-child pairs
dual.mark.transmission
                        Fraction of eggs marked for male and female
                        mark transmission
eigs                    Compute some eigenvalues of a matrix
gammaParamsConvert      Gamma distribution shape and scale parameters
                        from mean and standard deviation, or vice-versa
hockeyStick             Hockey-stick settler-recruit relationship
laplacianConnMat        Uniform Laplacian connectivity matrix
localRetention          Local retention of a connectivity matrix
mergeSubpops            Merge subpopulations
optim.rel.conn.dists    Maximum-likelihood estimate for relative
                        connectivity given two distributions for scores
                        for marked and unmarked individuals
optimalSplitConnMat     Iteratively, optimally split a connectivity
                        matrix
prob.marked             Returns probability a set of observations
                        correspond to marked individuals
protectedAreaSelection
                        Function to select optimal network of protected
                        areas based on connectivity
qualitySubpops          Quality measure for subpopulation division
r.marked.egg.fraction   Estimates of fraction of eggs marked accounting
                        for variability in reproductive output
recSplitConnMat         Recursively subdivides a set of subpoplations
reducedConnMat          Reduced connectivity matrix according to a set
                        of subpopulations
relativeLocalRetention
                        Relative local retention of a connectivity
                        matrix
selfRecruitment         Self recruitment of a connectivity matrix
settlerRecruitSlopeCorrection
                        Correction for slope of settler-recruit
                        relationship
splitConnMat            Split connectivity matrix into subpopulations
stepfun.hist            Create a probability density step function from
                        a histogram object
subpopsVectorToList     Convert subpopulation vector to a list of
                        indices
