LEVEL	NAME	ROLLUP	ASSIGNED	TAXID	READ_COUNT	READ_COUNT_RNR	READ_COUNT_RSNB	TOTAL_BP_MAPPED	TOTAL_BP_MISMATCH	LINEAR_LENGTH	LINEAR_DOC	PATHOGEN	SCORE	REL_ABUNDANCE	ABUNDANCE	LINEAR_COV	NOTE	RPKM	PRI_READ_COUNT	REB_READ_COUNT	REB_READ_COUNT_RNR	TOL_RS_READ_CNT	TOL_NS_READ_CNT	TOL_RS_RNR	TOL_NS_RNR	STR	SPE	GEN	FAM	ORD	CLA	PHY	SK	ROOT	STR_rnb	SPE_rnb	GEN_rnb	FAM_rnb	ORD_rnb	CLA_rnb	PHY_rnb	SK_rnb	ROOT_rnb	STR_rnr	SPE_rnr	GEN_rnr	FAM_rnr	ORD_rnr	CLA_rnr	PHY_rnr	SK_rnr	ROOT_rnr	STR_rni	SPE_rni	GEN_rni	FAM_rni	ORD_rni	CLA_rni	PHY_rni	SK_rni	ROOT_rni	SOURCE	LOCATION	HOST	DISEASE	DIFF_MEAN	DIFF_SD	MC_ERROR	HPD_2.5	HPD_97.5	P<0	P>0	SCORE_UNIQ	SCORE_TTEST
superkingdom	Bacteria	4057646		2	23837851	4057646.38	4026424.69	1784213166	11305420	483236737	3.6922		0.9896	0.9911	4057646	0.3647		0.7471	4060040	23838087.181887742	4057665.9919609115	23836256	1595	4057585.779372205	60.59875512366229	2181262	17694134	2452875	1491081	6360	4041	5284	1219	1595	2164955.02	1636521.92	169921.35	52737.87	1439.01	311.30	433.88	104.33	60.33	2179652.00	1650816.00	171699.71	53110.43	1449.62	314.46	437.99	105.57	60.60	2166525.60	17543688.71	2429521.43	1480697.67	6299.35	4004.29	5233.64	1211.77	1587.49												0.9895830677516305	
superkingdom	Archaea	36410		2157	36424	36410.71	36226.45	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	36426.798214999835	36411.42812025365	36424	0	36410.708333333336	0	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
superkingdom	Viruses	43		10239	498	43.47	22.71	37065	196	7410	5.0020		1.0000	0.0000	43	0.0116		0.0166	52	259.0198972568899	23.133261534809034	259	239	23.132804232804233	20.334077805279783	0	49	9	0	58	143	0	0	239	0	6.84	0.58	0	6.40	8.89	0	0	19.89	0	7.00	0.60	0	6.50	9.03	0	0	20.33	0	47.88	8.71	0	57.80	141.80	0	0	235.40												0.9999999999999996	
phylum	Deinococcus-Thermus	1398079		1297	1403112	1398079.81	1387555.40	105015973	578150	3069238	34.2156		0.9653	0.3415	1398079	0.4952		55.0237	1399048	1403123.3825801446	1398086.8812985604	1402958	154	1398030.1357503608	49.67263271644078	1396669	0	6217	0	2	70	0	154	0	1384827.72	0	2714.60	0	0.64	12.44	0	48.76	0	1395234.00	0	2782.37	0	0.67	13.10	0	49.67	0	1386225.64	0	6059.39	0	1.93	66.53	0	150.81	0												0.9653360347352211	
phylum	Firmicutes	1050621		1239	10421835	1050621.59	1043576.84	780102773	4047671	228567714	3.4130		0.9896	0.2566	1050621	0.3873		0.4343	1050984	10422644.490565533	1050645.6908795862	10421416	419	1050603.0472738917	18.53942504261681	259536	8818145	1340868	1164	913	341	449	419	0	258182.67	708295.18	76828.42	114.08	73.69	24.22	58.58	18.48	0	259473.00	713317.00	77540.28	114.77	74.45	24.63	58.92	18.54	0	258244.73	8756509.57	1329393.45	1157.41	899.91	332.81	445.48	417.99	0												0.9895830677516305	
phylum	Proteobacteria	945100		1224	9952532	945100.05	935572.30	744871350	5765583	223929541	3.3264		0.9893	0.2308	945100	0.3298		0.3396	945239	9951559.965032095	945047.0295681211	9950387	2145	945008.6720007305	91.37587858006222	56562	7316698	1089874	1477106	2440	2984	4723	550	1595	56025.73	744289.90	83138.24	51430.99	123.03	201.09	363.31	30.52	60.33	56450.00	751999.00	84075.04	51791.07	123.97	202.60	366.99	30.78	60.60	56136.32	7241257.35	1078297.85	1466853.16	2421.76	2965.37	4677.13	547.12	1587.49												0.9892831598888395	
phylum	Bacteroidetes	476819		976	487210	476819.07	474172.48	36470852	136249	5258914	6.9351		0.9306	0.1165	476819	0.2382		5.2693	477724	487244.4302602593	476837.0810662238	487187	23	476817.72720350686	1.347781217750258	468262	0	15886	0	2985	0	54	23	0	465687.55	0	7237.42	0	1239.83	0	7.68	1.35	0	468262.00	0	7299.29	0	1248.72	0	7.72	1.35	0	465687.55	0	15741.41	0	2955.75	0	53.67	23.00	0												0.9305901170753375	
phylum	Actinobacteria	187025		201174	1573162	187025.86	185443.34	117752218	777767	22411330	5.2541		0.9432	0.0457	187025	0.8105		1.6500	187045	1573274.437851751	187028.2174170766	1573089	73	187020.62631607417	5.23386520600143	233	1559291	30	12811	20	646	58	73	0	231.36	183936.83	2.67	1192.81	1.82	73.56	4.30	5.22	0	233.00	185500.00	2.73	1204.60	1.82	74.13	4.35	5.23	0	231.36	1545921.79	29.32	12687.09	20.00	639.57	57.36	72.85	0												0.9432117720826377	
phylum	Euryarchaeota	36410		28890	36424	36410.71	36226.45	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	36428.293710217404	36412.18623109239	36424	0	36410.708333333336	0	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
class	Deinococci	1398079		188787	1403112	1398079.81	1387555.40	105015973	578150	3069238	34.2156		0.9653	0.3415	1398079	0.4952		55.0237	1399048	1403434.0357674377	1398236.4724611498	1402958	154	1398030.1357503608	49.67263271644078	1396669	0	6217	0	2	70	0	154	0	1384827.72	0	2714.60	0	0.64	12.44	0	48.76	0	1395234.00	0	2782.37	0	0.67	13.10	0	49.67	0	1386225.64	0	6059.39	0	1.93	66.53	0	150.81	0												0.9653360347352211	
class	Bacilli	848072		91061	10215246	848072.90	841994.80	764637469	3997318	222955038	3.4296		0.9896	0.2071	848072	0.3920		0.3637	848332	10217887.841611583	848128.0260625238	10214422	824	848002.8684438574	70.03129497817558	59078	8818145	1335006	1047	805	341	426	398	0	58719.05	708295.18	74791.16	103.40	61.78	24.22	53.08	16.59	0	59015.00	713317.00	75479.76	104.02	62.45	24.63	53.39	16.64	0	58781.12	8756509.57	1323591.89	1040.83	792.84	332.81	422.60	397.01	0												0.9895830677516305	
class	Gammaproteobacteria	574990		1236	7019609	574990.47	569045.81	525478980	4061860	161643008	3.2509		0.9846	0.1404	574990	0.3020		0.2621	575040	7019377.927691352	574956.2511666508	7016997	2612	574871.405302557	119.06313233835034	25539	4986876	525132	1476639	896	1915	831	186	1595	25342.21	449979.71	42205.72	51369.24	34.92	114.00	46.13	11.85	60.33	25539.00	454771.00	42683.21	51728.34	35.15	114.69	46.54	11.93	60.60	25342.21	4935426.76	519677.67	1466391.29	890.40	1903.15	824.04	185.25	1587.49												0.9845512350591693	
class	Bacteroidia	476819		200643	487210	476819.07	474164.80	36470852	136249	5258914	6.9351		0.9306	0.1165	476819	0.2382		5.2693	477724	487298.28843450715	476880.3780500831	487133	77	476810.00516925455	9.069815470047669	468262	0	15886	0	2985	0	54	23	0	465687.55	0	7237.42	0	1239.83	0	7.68	1.35	0	468262.00	0	7299.29	0	1248.72	0	7.72	1.35	0	465687.55	0	15741.41	0	2955.75	0	53.67	23.00	0												0.9305901170753375	
class	Clostridia	202548		186801	206589	202548.69	201523.46	15465304	50353	5612676	2.7554		0.9696	0.0495	202548	0.2635		2.3199	202652	206615.08250253068	202571.15257255835	206545	44	202541.2592990343	7.427661064425772	200458	0	5862	117	108	0	23	21	0	199463.61	0	2037.26	10.68	11.91	0	5.50	1.90	0	200458.00	0	2060.52	10.74	12.00	0	5.53	1.90	0	199463.61	0	5801.56	116.59	107.07	0	22.88	20.97	0												0.9696091890975713	
class	Actinobacteria	187025		1760	1573162	187025.86	185439.04	117752218	777767	22411330	5.2541		0.9432	0.0457	187025	0.8105		1.6500	187045	1573564.7430053419	187043.8756768538	1573031	131	187016.2737519716	9.586429308565533	233	1559291	30	12811	20	646	58	73	0	231.36	183936.83	2.67	1192.81	1.82	73.56	4.30	5.22	0	233.00	185500.00	2.73	1204.60	1.82	74.13	4.35	5.23	0	231.36	1545921.79	29.32	12687.09	20.00	639.57	57.36	72.85	0												0.9432117720826377	
class	Epsilonproteobacteria	141789		29547	1520945	141789.17	140495.94	113775513	890480	29807268	3.8170		0.9893	0.0346	141789	0.3406		0.3953	141801	1521419.0555246866	141807.627350703	1520903	42	141786.70090516348	2.46774193548387	9	1491340	29010	199	345	0	30	12	0	7.77	139048.60	1420.00	7.19	12.39	0	0.95	1.49	0	8.00	140323.00	1435.98	7.21	12.51	0	0.97	1.50	0	8.76	1475842.27	28701.44	198.28	341.53	0	29.60	11.89	0												0.9892831598888395	
class	Betaproteobacteria	116568		28216	1164413	116568.83	115102.32	87091397	647764	24486352	3.5567		0.9854	0.0285	116568	0.6125		0.7113	116597	1160638.6811501062	116258.34314729585	1160245	4168	116241.18699052319	327.6412656414061	692	621916	535587	0	1199	851	3826	342	0	687.91	74805.95	39485.06	0	75.72	47.69	309.08	15.41	0	692.00	75497.00	39928.00	0	76.30	47.89	312.16	15.49	0	687.91	615951.77	529775.76	0	1189.83	847.53	3788.32	340.65	0												0.9854421727740429	
class	Alphaproteobacteria	111751		28211	247565	111751.58	110564.91	18525460	165479	7992913	2.3177		0.9827	0.0273	111751	0.4944		1.6862	111801	247602.98533464325	111758.87774548221	247519	46	111742.38557145468	9.196969696969697	30322	216566	145	268	0	218	36	10	0	29987.84	80455.65	27.46	54.57	0	39.40	7.15	1.77	0	30211.00	81408.00	27.85	55.52	0	40.02	7.33	1.86	0	30097.44	214036.55	142.99	263.59	0	214.69	35.17	9.32	0												0.9827275277876827	
class	Methanobacteria	36410		183925	36424	36410.71	36226.45	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	36436.358977811986	36416.08222735956	36424	0	36410.708333333336	0	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
order	Deinococcales	1398079		118964	1403112	1398079.81	1387542.96	105015973	578150	3069238	34.2156		0.9653	0.3415	1398079	0.4952		55.0237	1399048	1403606.1940718337	1398333.9363440382	1402888	224	1398017.0380952382	62.7702878390959	1396669	0	6217	0	2	70	0	154	0	1384827.72	0	2714.60	0	0.64	12.44	0	48.76	0	1395234.00	0	2782.37	0	0.67	13.10	0	49.67	0	1386225.64	0	6059.39	0	1.93	66.53	0	150.81	0												0.9653360347352211	
order	Bacillales	500970		1385	6177993	500970.32	497526.25	462440898	2356131	159151933	2.9057		0.9896	0.1224	500970	0.3511		0.2696	501021	6180834.595594326	501033.9587868949	6177672	321	500920.4116720018	49.909915338029904	39607	5599360	537504	749	452	228	85	8	0	39345.47	419985.37	38089.24	76.78	29.39	11.68	36.09	1.67	0	39544.00	422787.00	38482.45	77.19	29.77	11.94	36.27	1.70	0	39407.53	5561241.35	532313.41	745.15	442.93	220.83	84.51	7.85	0												0.9895830677516305	
order	Pseudomonadales	500142		72274	5148998	500142.77	494667.43	385462382	3376517	67938725	5.6737		0.9846	0.1222	500142	0.3813		0.6847	500177	5148962.609649032	500094.6017165321	5146328	2670	499981.2674839862	161.50342503588152	25120	4609452	509557	2199	0	1757	741	172	0	24927.53	428246.73	41360.62	132.55	0	106.97	43.22	10.20	0	25120.00	432897.00	41831.09	133.17	0	107.60	43.63	10.28	0	24927.53	4560478.88	504230.89	2188.59	0	1747.01	734.04	171.25	0												0.9845512350591693	
order	Bacteroidales	476819		171549	487210	476819.07	474164.80	36470852	136249	5258914	6.9351		0.9306	0.1165	476819	0.2382		5.2693	477724	487382.38272534555	476918.0870105563	487133	77	476810.00516925455	9.069815470047669	468262	0	15886	0	2985	0	54	23	0	465687.55	0	7237.42	0	1239.83	0	7.68	1.35	0	468262.00	0	7299.29	0	1248.72	0	7.72	1.35	0	465687.55	0	15741.41	0	2955.75	0	53.67	23.00	0												0.9305901170753375	
order	Lactobacillales	347102		186826	4037253	347102.58	344444.32	302196571	1641187	63803105	4.7364		0.9882	0.0848	347102	0.5523		0.7330	347311	4038475.3980412525	347136.49278424017	4036409	844	347057.8227728797	44.755378616080115	19471	3218785	797502	298	353	113	341	390	0	19373.59	288309.81	36701.92	26.62	32.39	12.54	17.00	14.91	0	19471.00	290530.00	36997.31	26.83	32.69	12.69	17.12	14.94	0	19373.59	3195268.23	791278.48	295.68	349.91	111.99	338.09	389.16	0												0.9881990545576192	
order	Clostridiales	202548		186802	206589	202548.69	201523.46	15465304	50353	5612676	2.7554		0.9696	0.0495	202548	0.2635		2.3199	202652	206650.73858680585	202587.1707354708	206545	44	202541.2592990343	7.427661064425772	200458	0	5862	117	108	0	23	21	0	199463.61	0	2037.26	10.68	11.91	0	5.50	1.90	0	200458.00	0	2060.52	10.74	12.00	0	5.53	1.90	0	199463.61	0	5801.56	116.59	107.07	0	22.88	20.97	0												0.9696091890975713	
order	Propionibacteriales	187025		85009	1573162	187025.86	185365.48	117752218	777767	22411330	5.2541		0.9432	0.0457	187025	0.8105		1.6500	187045	1573189.9663163705	186984.51735075132	1572385	777	186942.14187479304	83.71830648711455	233	1559291	30	12811	20	646	58	73	0	231.36	183936.83	2.67	1192.81	1.82	73.56	4.30	5.22	0	233.00	185500.00	2.73	1204.60	1.82	74.13	4.35	5.23	0	231.36	1545921.79	29.32	12687.09	20.00	639.57	57.36	72.85	0												0.9432117720826377	
order	Campylobacterales	141789		213849	1520945	141789.17	140495.94	113775513	890480	29807268	3.8170		0.9893	0.0346	141789	0.3406		0.3953	141801	1521681.6106363689	141818.84068314589	1520903	42	141786.70090516348	2.46774193548387	9	1491340	29010	199	345	0	30	12	0	7.77	139048.60	1420.00	7.19	12.39	0	0.95	1.49	0	8.00	140323.00	1435.98	7.21	12.51	0	0.97	1.50	0	8.76	1475842.27	28701.44	198.28	341.53	0	29.60	11.89	0												0.9892831598888395	
order	Neisseriales	116568		206351	1164413	116568.83	115054.63	87091397	647764	24486352	3.5567		0.9854	0.0285	116568	0.6125		0.7113	116597	1159987.5398247896	116219.63776707495	1159394	5019	116193.2994234738	375.5288326907998	692	621916	535587	0	1199	851	3826	342	0	687.91	74805.95	39485.06	0	75.72	47.69	309.08	15.41	0	692.00	75497.00	39928.00	0	76.30	47.89	312.16	15.49	0	687.91	615951.77	529775.76	0	1189.83	847.53	3788.32	340.65	0												0.9854421727740429	
order	Rhodobacterales	111751		204455	247565	111751.58	110525.52	18525460	165479	7992913	2.3177		0.9827	0.0273	111751	0.4944		1.6862	111801	247427.603201509	111727.6880699522	247301	264	111702.36771708683	49.21482406482406	30322	216566	145	268	0	218	36	10	0	29987.84	80455.65	27.46	54.57	0	39.40	7.15	1.77	0	30211.00	81408.00	27.85	55.52	0	40.02	7.33	1.86	0	30097.44	214036.55	142.99	263.59	0	214.69	35.17	9.32	0												0.9827275277876827	
order	Enterobacterales	74847		91347	1870611	74847.70	74264.38	140016598	685343	93704283	1.4942		0.9836	0.0183	74847	0.2624		0.0511	74863	1869710.689375428	74792.39341064579	1868754	1857	74775.44354060446	72.2539852689179	419	377424	15575	1474440	896	158	90	14	1595	414.68	21732.99	845.10	51236.69	34.92	7.03	2.90	1.65	60.33	419.00	21874.00	852.12	51595.17	35.15	7.10	2.90	1.65	60.60	414.68	374947.88	15446.77	1464202.71	890.40	156.13	90.00	14.00	1587.49												0.9836095874655515	
order	Methanobacteriales	36410		2158	36424	36410.71	36226.45	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	36442.64689189192	36418.96180192062	36424	0	36410.708333333336	0	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
order	Picornavirales	16		464095	126	16.20	6.84	9398	114	1083	8.6777		0.7720	0.0000	16	0.0137		0.0501	17	49.02508504564859	7.001586738702858	49	77	6.999999999999999	9.2015873015873	0	49	0	0	0	8	0	0	69	0	6.84	0	0	0	0.37	0	0	8.68	0	7.00	0	0	0	0.37	0	0	8.83	0	47.88	0	0	0	7.97	0	0	67.93												0.772016106722409	
family	Deinococcaceae	1398079		183710	1403112	1398079.81	1387542.32	105015973	578150	3069238	34.2156		0.9653	0.3415	1398079	0.4952		55.0237	1399048	1403997.5667208282	1398837.094214106	1402886	226	1398016.3714285714	63.43695450576257	1396669	0	6217	0	2	70	0	154	0	1384827.72	0	2714.60	0	0.64	12.44	0	48.76	0	1395234.00	0	2782.37	0	0.67	13.10	0	49.67	0	1386225.64	0	6059.39	0	1.93	66.53	0	150.81	0												0.9653360347352211	
family	Bacteroidaceae	476819		815	487210	476819.07	472924.97	36470852	136249	5258914	6.9351		0.9306	0.1165	476819	0.2382		5.2693	477724	484531.61121627525	475840.4722257209	484148	3062	475561.2880952381	1257.7868894865032	468262	0	15886	0	2985	0	54	23	0	465687.55	0	7237.42	0	1239.83	0	7.68	1.35	0	468262.00	0	7299.29	0	1248.72	0	7.72	1.35	0	465687.55	0	15741.41	0	2955.75	0	53.67	23.00	0												0.9305901170753375	
family	Moraxellaceae	469515		468	4689411	469515.92	464371.05	351062803	3109845	39672344	8.8491		0.9738	0.1147	469515	0.6353		1.8341	469533	4691024.957454684	469662.7538926639	4687311	2100	469387.19434021064	128.7226699126466	25105	4155251	505046	1909	0	1689	240	171	0	24912.76	398227.30	41112.30	118.69	0	103.05	15.16	9.74	0	25105.00	402583.00	41580.00	119.19	0	103.66	15.28	9.78	0	24912.76	4110701.92	499769.64	1901.09	0	1679.12	237.92	170.32	0												0.9738308289954181	
family	Staphylococcaceae	363022		90964	4416775	363022.80	360648.21	330636770	1607789	98008954	3.3735		0.9856	0.0887	363022	0.6271		0.5667	363057	4419750.184996089	363198.725447251	4416251	524	362985.6302477566	37.166800539066216	30875	4198191	186458	727	339	176	5	4	0	30656.03	317155.07	12761.06	76.05	25.42	10.01	0.34	0.90	0	30812.00	319226.00	12871.17	76.46	25.66	10.26	0.34	0.90	0	30718.09	4170167.99	184931.60	723.15	334.09	169.23	4.93	4.00	0												0.9856167417923385	
family	Streptococcaceae	279079		1300	3809173	279079.41	276952.07	285125991	1539073	55776127	5.1120		0.9882	0.0682	279079	0.5476		0.6683	279242	3811235.414383249	279194.27874935354	3808218	955	279030.47046380816	48.94402303682281	11955	2999123	797035	105	197	39	341	378	0	11897.84	228420.70	36629.13	4.40	12.86	5.30	17.00	13.45	0	11955.00	230147.00	36924.02	4.45	13.01	5.33	17.12	13.48	0	11897.84	2977393.13	790814.76	103.93	195.24	38.75	338.09	377.16	0												0.9881990545576192	
family	Clostridiaceae	202548		31979	206589	202548.69	201511.55	15465304	50353	5612676	2.7554		0.9696	0.0495	202548	0.2635		2.3199	202652	206600.56888524626	202648.15906892193	206437	152	202529.26176323678	19.425196861961574	200458	0	5862	117	108	0	23	21	0	199463.61	0	2037.26	10.68	11.91	0	5.50	1.90	0	200458.00	0	2060.52	10.74	12.00	0	5.53	1.90	0	199463.61	0	5801.56	116.59	107.07	0	22.88	20.97	0												0.9696091890975713	
family	Propionibacteriaceae	187025		31957	1573162	187025.86	185363.67	117752218	777767	22411330	5.2541		0.9432	0.0457	187025	0.8105		1.6500	187045	1573610.8521982506	187050.06931994008	1572365	797	186940.32369297487	85.53648830529636	233	1559291	30	12811	20	646	58	73	0	231.36	183936.83	2.67	1192.81	1.82	73.56	4.30	5.22	0	233.00	185500.00	2.73	1204.60	1.82	74.13	4.35	5.23	0	231.36	1545921.79	29.32	12687.09	20.00	639.57	57.36	72.85	0												0.9432117720826377	
family	Helicobacteraceae	141789		72293	1520945	141789.17	140483.55	113775513	890480	29807268	3.8170		0.9893	0.0346	141789	0.3406		0.3953	141801	1521762.8032911362	141857.41764117786	1520558	387	141774.18735264978	14.98129444917543	9	1491340	29010	199	345	0	30	12	0	7.77	139048.60	1420.00	7.19	12.39	0	0.95	1.49	0	8.00	140323.00	1435.98	7.21	12.51	0	0.97	1.50	0	8.76	1475842.27	28701.44	198.28	341.53	0	29.60	11.89	0												0.9892831598888395	
family	Neisseriaceae	116568		481	1164413	116568.83	114978.91	87091397	647764	24486352	3.5567		0.9854	0.0285	116568	0.6125		0.7113	116597	1159112.6875513974	116185.16791965782	1158195	6218	116116.99999999996	451.82825616464277	692	621916	535587	0	1199	851	3826	342	0	687.91	74805.95	39485.06	0	75.72	47.69	309.08	15.41	0	692.00	75497.00	39928.00	0	76.30	47.89	312.16	15.49	0	687.91	615951.77	529775.76	0	1189.83	847.53	3788.32	340.65	0												0.9854421727740429	
family	Rhodobacteraceae	111751		31989	247565	111751.58	110525.52	18525460	165479	7992913	2.3177		0.9827	0.0273	111751	0.4944		1.6862	111801	247496.94718432397	111767.9439723133	247301	264	111702.36771708683	49.21482406482406	30322	216566	145	268	0	218	36	10	0	29987.84	80455.65	27.46	54.57	0	39.40	7.15	1.77	0	30211.00	81408.00	27.85	55.52	0	40.02	7.33	1.86	0	30097.44	214036.55	142.99	263.59	0	214.69	35.17	9.32	0												0.9827275277876827	
family	Listeriaceae	98569		186820	1496180	98569.38	97880.00	111981553	578257	45349808	2.4693		0.9896	0.0241	98569	0.3753		0.1990	98569	1497281.4209998276	98623.86438823777	1496096	84	98566.00000000006	3.380645161290321	1339	1368863	125894	0	28	52	0	4	0	1331.64	90997.34	5551.03	0	0.90	1.66	0	0.77	0	1339.00	91630.00	5597.00	0	0.90	1.68	0	0.80	0	1331.64	1359055.13	124907.05	0	28.00	51.60	0	3.85	0												0.9895830677516305	
family	Enterobacteriaceae	74427		543	1870173	74427.62	73814.56	139983821	685089	93671768	1.4944		0.9815	0.0182	74427	0.2663		0.0516	74432	1868908.6440551188	74364.7997765918	1867429	2744	74321.16861620091	106.45572443476996	5	377420	15564	1474440	888	157	90	14	1595	4.87	21731.01	842.00	51236.69	34.09	6.92	2.90	1.65	60.33	5.00	21872.00	849.00	51595.17	34.31	6.99	2.90	1.65	60.60	4.87	374943.92	15435.84	1464202.71	882.47	155.13	90.00	14.00	1587.49												0.9815413413585441	
family	Enterococcaceae	66659		81852	226672	66659.33	66103.51	16965199	101772	7925347	2.1406		0.9532	0.0163	66659	0.6742		1.3832	66685	226611.41178095053	66670.22860285992	226432	240	66631.11198523697	28.219897306994078	6167	219662	410	193	156	72	0	12	0	6133.84	59889.11	58.34	22.22	19.53	6.97	0	1.46	0	6167.00	60383.00	58.73	22.38	19.68	7.08	0	1.46	0	6133.84	217875.09	407.09	191.75	154.67	71.25	0	12.00	0												0.9532152672184029	
family	Bacillaceae	39378		186817	265038	39378.14	38968.65	19822575	170085	15793171	1.2551		0.9816	0.0096	39378	0.0896		0.0545	39395	265082.87023325195	39362.110633055636	264873	165	39339.01617751331	39.12771636965184	7393	32306	225152	22	85	0	80	0	0	7357.80	11832.96	19777.16	0.73	3.07	0	35.75	0	0	7393.00	11931.00	20014.28	0.73	3.20	0	35.92	0	0	7357.80	32018.23	222474.76	22.00	80.84	0	79.57	0	0												0.9816209728445735	
family	Methanobacteriaceae	36410		2159	36424	36410.71	36226.45	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	36452.86029673077	36432.0836895719	36424	0	36410.708333333336	0	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
family	Pseudomonadaceae	30626		135621	459587	30626.85	30296.38	34399579	266672	28266381	1.2170		0.9846	0.0075	30626	0.2442		0.0645	30644	459380.6988475859	30612.033772452338	459017	570	30594.07314377547	32.7807551232349	15	454201	4511	290	0	68	501	1	0	14.77	30019.43	248.32	13.86	0	3.92	28.07	0.47	0	15.00	30314.00	251.09	13.98	0	3.93	28.35	0.50	0	14.77	449776.96	4461.25	287.49	0	67.89	496.12	0.93	0												0.9845512350591693	
family	Lactobacillaceae	1363		33958	1408	1363.83	1356.35	105381	342	101631	1.0369		0.9823	0.0003	1363	0.0536		0.1756	1384	1407.1140340765282	1364.3544955560965	1406	2	1363.5540043290043	0.2777777777777778	1349	0	57	0	0	2	0	0	0	1341.91	0	14.45	0	0	0.28	0	0	0	1349.00	0	14.55	0	0	0.28	0	0	0	1341.91	0	56.63	0	0	1.99	0	0	0												0.9822584219816944	
family	Yersiniaceae	420		1903411	438	420.07	414.90	32777	254	32515	1.0081		0.9836	0.0001	420	0.0062		0.0196	431	429.33991509162917	419.36668486825863	429	9	419.1206349206349	0.952550317066446	414	4	11	0	8	1	0	0	0	409.81	1.98	3.10	0	0.83	0.11	0	0	0	414.00	2.00	3.12	0	0.84	0.11	0	0	0	409.81	3.96	10.93	0	7.93	1.00	0	0	0												0.9836095874655515	
family	Picornaviridae	15		12058	121	15.97	6.84	9023	113	1008	8.9514		0.7720	0.0000	15	0.0144		0.0558	17	49.03882480067559	7.004109436495991	49	72	6.999999999999999	8.974074074074073	0	49	0	0	0	8	0	0	64	0	6.84	0	0	0	0.37	0	0	8.45	0	7.00	0	0	0	0.37	0	0	8.60	0	47.88	0	0	0	7.97	0	0	62.95												0.772016106722409	
genus	Deinococcus	1398079		1298	1403112	1398079.81	1387542.32	105015973	578150	3069238	34.2156		0.9653	0.3415	1398079	0.4952		55.0237	1399048	1497603.4273817374	1417233.4477115725	1402886	226	1398016.3714285714	63.43695450576257	1396669	0	6217	0	2	70	0	154	0	1384827.72	0	2714.60	0	0.64	12.44	0	48.76	0	1395234.00	0	2782.37	0	0.67	13.10	0	49.67	0	1386225.64	0	6059.39	0	1.93	66.53	0	150.81	0												0.9653360347352211	
genus	Bacteroides	476819		816	487210	476819.07	472924.97	36470852	136249	5258914	6.9351		0.9306	0.1165	476819	0.2382		5.2693	477724	516835.7971781124	482098.334253882	484148	3062	475561.2880952381	1257.7868894865032	468262	0	15886	0	2985	0	54	23	0	465687.55	0	7237.42	0	1239.83	0	7.68	1.35	0	468262.00	0	7299.29	0	1248.72	0	7.72	1.35	0	465687.55	0	15741.41	0	2955.75	0	53.67	23.00	0												0.9305901170753375	
genus	Acinetobacter	469515		469	4689411	469515.92	464252.35	351062803	3109845	39672344	8.8491		0.9738	0.1147	469515	0.6353		1.8341	469533	5001742.189929364	475718.53887599567	4685402	4009	469268.00000000495	247.9170101183644	25105	4155251	505046	1909	0	1689	240	171	0	24912.76	398227.30	41112.30	118.69	0	103.05	15.16	9.74	0	25105.00	402583.00	41580.00	119.19	0	103.66	15.28	9.78	0	24912.76	4110701.92	499769.64	1901.09	0	1679.12	237.92	170.32	0												0.9738308289954181	
genus	Staphylococcus	363022		1279	4416775	363022.80	360572.16	330636770	1607789	98008954	3.3735		0.9856	0.0887	363022	0.6271		0.5667	363057	4713643.072984061	367897.706299046	4415524	1251	362909.17156067543	113.62548762025673	30875	4198191	186458	727	339	176	5	4	0	30656.03	317155.07	12761.06	76.05	25.42	10.01	0.34	0.90	0	30812.00	319226.00	12871.17	76.46	25.66	10.26	0.34	0.90	0	30718.09	4170167.99	184931.60	723.15	334.09	169.23	4.93	4.00	0												0.9856167417923385	
genus	Streptococcus	279079		1301	3809173	279079.41	276947.68	285125991	1539073	55776127	5.1120		0.9882	0.0682	279079	0.5476		0.6683	279242	4065222.03561583	282861.50083394046	3808113	1060	279026.0204846535	53.3940021915107	11955	2999123	797035	105	197	39	341	378	0	11897.84	228420.70	36629.13	4.40	12.86	5.30	17.00	13.45	0	11955.00	230147.00	36924.02	4.45	13.01	5.33	17.12	13.48	0	11897.84	2977393.13	790814.76	103.93	195.24	38.75	338.09	377.16	0												0.9881990545576192	
genus	Clostridium	202548		1485	206589	202548.69	201500.87	15465304	50353	5612676	2.7554		0.9696	0.0495	202548	0.2635		2.3199	202652	220249.9270342708	205302.32823062848	206320	269	202518.51691919193	30.17004090680562	200458	0	5862	117	108	0	23	21	0	199463.61	0	2037.26	10.68	11.91	0	5.50	1.90	0	200458.00	0	2060.52	10.74	12.00	0	5.53	1.90	0	199463.61	0	5801.56	116.59	107.07	0	22.88	20.97	0												0.9696091890975713	
genus	Propionibacterium	186906		1743	1571968	186906.09	184170.86	117663347	776745	22379828	5.2576		0.9432	0.0457	186906	0.8908		1.8148	186970	1664849.0437476018	188288.8430390563	1559554	12414	185735.72727272846	1170.3632380476417	233	1559291	30	11643	20	628	55	68	0	231.36	183936.83	2.67	1077.12	1.82	72.39	4.08	4.84	0	233.00	185500.00	2.73	1086.66	1.82	72.90	4.13	4.85	0	231.36	1545921.79	29.32	11540.83	20.00	622.51	54.36	67.87	0												0.9432117720826377	
genus	Helicobacter	141789		209	1520945	141789.17	140476.36	113775513	890480	29807268	3.8170		0.9893	0.0346	141789	0.3406		0.3953	141801	1623007.7492046189	143715.6987028814	1520359	586	141766.9756117791	22.19303531984845	9	1491340	29010	199	345	0	30	12	0	7.77	139048.60	1420.00	7.19	12.39	0	0.95	1.49	0	8.00	140323.00	1435.98	7.21	12.51	0	0.97	1.50	0	8.76	1475842.27	28701.44	198.28	341.53	0	29.60	11.89	0												0.9892831598888395	
genus	Neisseria	116568		482	1164413	116568.83	114978.91	87091397	647764	24486352	3.5567		0.9854	0.0285	116568	0.6125		0.7113	116597	1236391.83909198	117713.13956771692	1158195	6218	116116.99999999996	451.82825616464277	692	621916	535587	0	1199	851	3826	342	0	687.91	74805.95	39485.06	0	75.72	47.69	309.08	15.41	0	692.00	75497.00	39928.00	0	76.30	47.89	312.16	15.49	0	687.91	615951.77	529775.76	0	1189.83	847.53	3788.32	340.65	0												0.9854421727740429	
genus	Rhodobacter	111751		1060	247565	111751.58	110470.95	18525460	165479	7992913	2.3177		0.9827	0.0273	111751	0.4944		1.6862	111801	263711.7110559181	113181.54548098332	247033	532	111646.85238095238	104.7301601992778	30322	216566	145	268	0	218	36	10	0	29987.84	80455.65	27.46	54.57	0	39.40	7.15	1.77	0	30211.00	81408.00	27.85	55.52	0	40.02	7.33	1.86	0	30097.44	214036.55	142.99	263.59	0	214.69	35.17	9.32	0												0.9827275277876827	
genus	Listeria	98569		1637	1496180	98569.38	97880.00	111981553	578257	45349808	2.4693		0.9896	0.0241	98569	0.3753		0.1990	98569	1597106.6054491296	99920.88423427747	1496096	84	98566.00000000006	3.380645161290321	1339	1368863	125894	0	28	52	0	4	0	1331.64	90997.34	5551.03	0	0.90	1.66	0	0.77	0	1339.00	91630.00	5597.00	0	0.90	1.68	0	0.80	0	1331.64	1359055.13	124907.05	0	28.00	51.60	0	3.85	0												0.9895830677516305	
genus	Escherichia	67534		561	1675536	67534.46	22575.94	125414894	608734	83457607	1.5027		0.9815	0.0165	67534	0.2692		0.0531	67972	419518.8921359536	23036.36318141874	392986	1282550	22723.999999999996	44810.46485935851	4	377418	15564	1280028	792	149	75	14	1492	3.92	21730.03	842.00	44403.47	31.00	6.67	2.42	1.65	56.79	4.00	21871.00	849.00	44711.42	31.20	6.73	2.42	1.65	57.04	3.92	374941.96	15435.84	1271191.81	787.12	147.29	75.00	14.00	1485.19												0.9815413413585441	
genus	Enterococcus	66659		1350	226672	66659.33	66081.29	16965199	101772	7925347	2.1406		0.9532	0.0163	66659	0.6742		1.3832	66685	241513.78074014344	67524.33248548208	226239	433	66608.73156565655	50.600316887413655	6167	219662	410	193	156	72	0	12	0	6133.84	59889.11	58.34	22.22	19.53	6.97	0	1.46	0	6167.00	60383.00	58.73	22.38	19.68	7.08	0	1.46	0	6133.84	217875.09	407.09	191.75	154.67	71.25	0	12.00	0												0.9532152672184029	
genus	Bacillus	39378		1386	265038	39378.14	38967.92	19822575	170085	15793171	1.2551		0.9816	0.0096	39378	0.0896		0.0545	39395	282732.7133819002	39879.025283044546	264851	187	39338.28284417998	39.86104970298518	7393	32306	225152	22	85	0	80	0	0	7357.80	11832.96	19777.16	0.73	3.07	0	35.75	0	0	7393.00	11931.00	20014.28	0.73	3.20	0	35.92	0	0	7357.80	32018.23	222474.76	22.00	80.84	0	79.57	0	0												0.9816209728445735	
genus	Methanobrevibacter	36410		2172	36424	36410.71	36224.26	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	38875.734746059716	36908.96976283596	36417	7	36408.5	2.208333333333333	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
genus	Pseudomonas	30626		286	459587	30626.85	30282.52	34399579	266672	28266381	1.2170		0.9846	0.0075	30626	0.2442		0.0645	30644	489698.46974917577	31000.44661202345	458727	860	30580.09388304129	46.76001585741554	15	454201	4511	290	0	68	501	1	0	14.77	30019.43	248.32	13.86	0	3.92	28.07	0.47	0	15.00	30314.00	251.09	13.98	0	3.93	28.35	0.50	0	14.77	449776.96	4461.25	287.49	0	67.89	496.12	0.93	0												0.9845512350591693	
genus	Shigella	6893		620	194637	6893.16	1.93	14568927	76355	10214161	1.4263		0.9688	0.0017	6893	0.2446		0.0403	6460	3.2025483768069622	2.027491918801157	3	194634	2.0	6891.159481277184	1	2	0	194412	96	8	15	0	103	0.95	0.98	0	6833.22	3.09	0.25	0.48	0	3.53	1.00	1.00	0	6883.75	3.11	0.26	0.48	0	3.56	0.95	1.96	0	193010.89	95.35	7.84	15.00	0	102.31												0.9688282376656812	
genus	Lactobacillus	1363		1578	1408	1363.83	1356.35	105381	342	101631	1.0369		0.9823	0.0003	1363	0.0536		0.1756	1384	1500.927672596863	1382.297362313007	1406	2	1363.5540043290043	0.2777777777777778	1349	0	57	0	0	2	0	0	0	1341.91	0	14.45	0	0	0.28	0	0	0	1349.00	0	14.55	0	0	0.28	0	0	0	1341.91	0	56.63	0	0	1.99	0	0	0												0.9822584219816944	
genus	Serratia	420		613	438	420.07	414.90	32777	254	32515	1.0081		0.9836	0.0001	420	0.0062		0.0196	431	457.9644178833956	424.88185015219864	429	9	419.1206349206349	0.952550317066446	414	4	11	0	8	1	0	0	0	409.81	1.98	3.10	0	0.83	0.11	0	0	0	414.00	2.00	3.12	0	0.84	0.11	0	0	0	409.81	3.96	10.93	0	7.93	1.00	0	0	0												0.9836095874655515	
genus	Cardiovirus	15		12103	113	15.60	6.84	8423	111	858	9.8170		0.4114	0.0000	15	0.0156		0.0693	17	52.30829015451371	7.096221715804048	49	64	6.999999999999999	8.6	0	49	0	0	0	0	0	0	64	0	6.84	0	0	0	0	0	0	8.45	0	7.00	0	0	0	0	0	0	8.60	0	47.88	0	0	0	0	0	0	62.95												0.41144660802562244	
species	Deinococcus radiodurans	1397068		1299	1400750	1397068.73	1384826.73	104845727	575576	3041014	34.4772		0.9653	0.3412	1397068	0.9935		111.3358	1398871	1674637.8741762065	1477219.387780209	1396668	4082	1395233.0	1835.7275917494946	1396668	0	3905	0	2	40	0	135	0	1384826.73	0	1762.90	0	0.64	8.68	0	46.22	0	1395233.00	0	1779.32	0	0.67	8.79	0	46.95	0	1386224.65	0	3869.48	0	1.93	39.60	0	133.01	0												0.9653360347352211	
species	Bacteroides vulgatus	473049		821	478471	473049.33	465687.55	35819302	131425	5148492	6.9572	Pathogen	0.9306	0.1155	473049	0.9972		22.3494	475702	561457.1825498248	495777.9130516095	468262	10209	468262.0	4787.325019523821	468262	0	7717	0	2467	0	19	6	0	465687.55	0	3634.45	0	1122.06	0	3.35	0.35	0	468262.00	0	3655.28	0	1128.34	0	3.36	0.35	0	465687.55	0	7672.88	0	2453.03	0	18.91	6.00	0	healthy mouse fecal sample	Germany	Mus musculus	commensal; sepsis; abscess or surgical infections								0.9305901170753375	
species	Acinetobacter baumannii	461928		470	4628402	461928.96	421600.70	346504019	3053429	38771005	8.9372	Pathogen	0.9738	0.1128	461928	0.7627		2.2167	463272	5010479.762268149	451172.27886207064	4178800	449602	426132.000000005	35796.96114912775	23549	4155251	446213	1603	0	1441	204	141	0	23373.40	398227.30	35222.01	99.82	0	88.34	12.93	8.03	0	23549.00	402583.00	35586.75	100.24	0	88.87	13.03	8.07	0	23373.40	4110701.92	441894.20	1596.41	0	1432.49	202.32	140.45	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9738308289954181	
species	Staphylococcus epidermidis	202890		1282	382814	202890.28	198867.79	28654232	115517	4674482	6.1299		0.9807	0.0496	202890	0.9137		9.6744	204247	445697.4504142408	211806.35474133608	371717	11097	200051.0	2839.278153991074	28385	343332	10848	151	72	21	3	2	0	28246.81	170620.97	2772.92	29.73	14.97	3.35	0.27	0.67	0	28385.00	171666.00	2790.04	29.89	15.03	3.38	0.27	0.67	0	28246.81	341241.95	10779.67	150.32	71.65	20.84	2.96	2.00	0												0.9807441749311485	
species	Clostridium beijerinckii	201367		1520	202850	201367.62	199463.61	15186423	48305	5476683	2.7729		0.9696	0.0492	201367	0.9127		8.1860	201987	240353.87005474028	212237.2707896424	200458	2392	200458.0	909.6201011406895	200458	0	2308	31	30	0	17	6	0	199463.61	0	892.16	3.16	3.45	0	4.91	0.52	0	200458.00	0	897.48	3.20	3.48	0	4.94	0.52	0	199463.61	0	2294.45	30.84	29.76	0	16.91	6.00	0												0.9696091890975713	
species	Propionibacterium acnes	186906		1747	1571968	186906.09	184168.19	117663347	776745	22379828	5.2576	Pathogen	0.9432	0.0457	186906	0.8908		1.8148	186970	1869906.0593403545	196647.00343998696	1559524	12444	185733.0000000012	1173.0905107749145	233	1559291	30	11643	20	628	55	68	0	231.36	183936.83	2.67	1077.12	1.82	72.39	4.08	4.84	0	233.00	185500.00	2.73	1086.66	1.82	72.90	4.13	4.85	0	231.36	1545921.79	29.32	11540.83	20.00	622.51	54.36	67.87	0			Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus	Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis								0.9432117720826377	
species	Streptococcus pneumoniae	181304		1313	3421487	181304.70	146844.79	256112445	1371163	46066473	5.5596		0.9882	0.0443	181304	0.8071		0.7749	181893	3205715.455345778	156606.75008655127	2673605	747882	147914.9999999997	33389.695158920214	6322	2667283	747055	80	78	17	288	364	0	6291.95	140552.84	33099.93	3.06	2.74	0.77	13.49	13.01	0	6322.00	141593.00	33356.45	3.09	2.75	0.77	13.61	13.03	0	6291.95	2648116.28	741319.61	79.43	77.49	17.00	285.17	363.49	0												0.9881990545576192	
species	Staphylococcus aureus	159100		1280	4024533	159100.22	148859.39	301278401	1487278	93077876	3.2368	Pathogen	0.9856	0.0389	159100	0.6874		0.2866	158045	4624950.51443608	158710.50976219	3857264	167269	149902.0000000005	9198.220862887914	2405	3854859	166408	494	230	133	2	2	0	2325.29	146534.10	9068.26	38.46	8.48	4.23	0.07	0.24	0	2342.00	147560.00	9146.16	38.70	8.62	4.43	0.07	0.24	0	2387.36	3828926.04	165053.71	491.00	226.17	126.72	1.97	2.00	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9856167417923385	
species	Helicobacter pylori	141708		210	1519719	141708.72	139056.36	113684181	889496	29762652	3.8197	Pathogen	0.9893	0.0346	141708	0.3463		0.4022	141760	1788162.6263469998	148577.10067536024	1491349	28370	140331.00000000026	1377.7189128768196	9	1491340	27795	194	339	0	30	12	0	7.77	139048.60	1341.72	7.00	12.16	0	0.95	1.49	0	8.00	140323.00	1355.94	7.02	12.29	0	0.97	1.50	0	8.76	1475842.27	27507.76	193.29	335.56	0	29.60	11.89	0	Gastric biopsy	Mexico; Australia: Perth; Taiwan: Taipei	Homo sapiens	Gastric ulcer								0.9892831598888395	
species	Rhodobacter sphaeroides	111751		1063	247565	111751.58	110443.49	18525460	165479	7992913	2.3177		0.9827	0.0273	111751	0.4944		1.6862	111801	296024.5351648461	118177.93217666092	246888	677	111619.0	132.58254115165877	30322	216566	145	268	0	218	36	10	0	29987.84	80455.65	27.46	54.57	0	39.40	7.15	1.77	0	30211.00	81408.00	27.85	55.52	0	40.02	7.33	1.86	0	30097.44	214036.55	142.99	263.59	0	214.69	35.17	9.32	0												0.9827275277876827	
species	Neisseria meningitidis	108573		487	1062890	108573.95	75492.87	79507333	559707	21725936	3.6596	Pathogen	0.9854	0.0265	108573	0.6978		0.8507	112450	746518.0799241316	80664.94321464484	622605	440285	76188.0	32385.952345750266	692	621913	434727	0	1007	699	3544	308	0	687.91	74804.96	31662.28	0	64.08	39.60	288.38	14.01	0	692.00	75496.00	31976.47	0	64.54	39.76	291.10	14.08	0	687.91	615948.81	430484.93	0	999.69	696.12	3510.80	306.75	0	human clinical samples		Homo sapiens	meningococcal disease								0.9854421727740429	
species	Listeria monocytogenes	98154		1639	1488477	98154.07	92328.98	111405581	574031	45031452	2.4740	Pathogen	0.9896	0.0240	98154	0.4120		0.2191	98270	1642904.5159422185	98432.02480341156	1370202	118275	92969.00000000006	5185.0749660083175	1339	1368863	118194	0	28	49	0	4	0	1331.64	90997.34	5141.02	0	0.90	1.57	0	0.77	0	1339.00	91630.00	5181.79	0	0.90	1.58	0	0.80	0	1331.64	1359055.13	117286.77	0	28.00	48.60	0	3.85	0	human clinical samples		apodemus agrarius; apodemus peninsulae; Bos taurus; Capra hircus; cavia porcellus; Cervus elaphus; chinchilla brevicaudata; Homo sapiens; lama pacos; microtus arvalis; myodes glareolus; myodes rufocanus; myodes rutilus; oryctolagus cuniculus; Ovis aries; rattus rattus; Sus scrofa; vulpes lagopus	listerosis								0.9895830677516305	
species	Streptococcus mutans	90763		1309	317557	90763.82	89341.76	23766671	133065	7000010	3.3952		0.9692	0.0222	90763	0.8653		2.7371	91007	375108.53384387365	95313.97133348016	312845	4712	90024.0	739.8248286602119	5372	307473	4597	14	74	8	19	0	0	5346.08	83995.68	722.84	0.88	7.75	1.06	1.34	0	0	5372.00	84652.00	728.66	0.89	7.84	1.09	1.34	0	0	5346.08	305094.83	4560.00	13.89	73.16	7.79	19.00	0	0												0.9692248398480202	
species	Escherichia coli	67378		562	1671948	67378.19	21733.95	125146416	607043	83257145	1.5031	Pathogen	0.9815	0.0165	67378	0.2726		0.0538	67837	452537.8799738608	23160.414144226852	377422	1294526	21874.999999999996	45503.18581401267	4	377418	14715	1277300	784	148	75	14	1490	3.92	21730.03	782.75	44308.30	30.74	6.64	2.42	1.65	56.73	4.00	21871.00	789.01	44615.49	30.94	6.70	2.42	1.65	56.98	3.92	374941.96	14596.83	1268484.61	779.17	146.29	75.00	14.00	1483.19	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9815413413585441	
species	Enterococcus faecalis	66659		1351	226672	66659.33	66022.95	16965199	101772	7925347	2.1406		0.9532	0.0163	66659	0.6742		1.3832	66685	270774.2974617722	70460.59708792216	225829	843	66549.99999999999	109.33188254397928	6167	219662	410	193	156	72	0	12	0	6133.84	59889.11	58.34	22.22	19.53	6.97	0	1.46	0	6167.00	60383.00	58.73	22.38	19.68	7.08	0	1.46	0	6133.84	217875.09	407.09	191.75	154.67	71.25	0	12.00	0												0.9532152672184029	
species	Methanobrevibacter smithii	36410		2173	36424	36410.71	36216.87	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	43645.657563492605	38539.98789778294	36401	23	36401.0	9.708333333333332	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
species	Bacillus cereus	31367		1396	160595	31367.92	19187.77	12014672	90440	9415074	1.2761	Pathogen	0.9816	0.0077	31367	0.1374		0.1117	34978	47596.44028022314	20456.336533970607	39696	120899	19320.999999999996	12046.924797612295	7390	32306	120779	9	35	0	76	0	0	7354.81	11832.96	11887.53	0.30	1.20	0	34.84	0	0	7390.00	11931.00	12010.36	0.30	1.26	0	35.00	0	0	7354.81	32018.23	119498.84	9.00	33.27	0	75.61	0	0	Clinical sample (blood)	USA	Homo sapiens	Anthrax-like illness								0.9816209728445735	
species	Pseudomonas aeruginosa	30626		287	459587	30626.85	30034.20	34399579	266672	28266381	1.2170	Pathogen	0.9846	0.0075	30626	0.2442		0.0645	30644	544615.6972572006	32111.186312240243	454216	5371	30328.999999999956	297.8538988987471	15	454201	4511	290	0	68	501	1	0	14.77	30019.43	248.32	13.86	0	3.92	28.07	0.47	0	15.00	30314.00	251.09	13.98	0	3.93	28.35	0.50	0	14.77	449776.96	4461.25	287.49	0	67.89	496.12	0.93	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9845512350591693	
species	Bacillus thuringiensis	5000		1428	54389	5001.00	2.00	4066199	40081	3326060	1.2225	Pathogen	0.8198	0.0012	5000	0.0503		0.0185	2991	2.3980471725223267	2.1175235789007414	2	54387	2.0	4998.998351557042	2	0	54343	9	33	0	2	0	0	2.00	0	4926.67	0.30	1.23	0	0.66	0	0	2.00	0	4996.75	0.30	1.28	0	0.67	0	0	2.00	0	53636.99	9.00	31.61	0	1.97	0	0	soil	China: Wuhan	Invertebrate	None								0.8197816322752505	
species	Acinetobacter pittii	4559		48296	34667	4559.06	954.35	2591018	32884	494999	5.2344		0.7627	0.0011	4559	0.1282		0.2879	3821	1155.8587371557614	1020.6463650301573	964	33703	964.0	3595.064835375318	964	0	33580	61	0	46	9	7	0	954.35	0	3526.59	3.67	0	2.68	0.54	0.38	0	964.00	0	3587.76	3.68	0	2.70	0.54	0.38	0	954.35	0	33031.88	60.71	0	45.68	8.87	6.97	0												0.7627200132084588	
species	Streptococcus agalactiae	4290		1311	25757	4290.78	4130.05	1927829	10870	1765873	1.0917	Pathogen	0.9800	0.0010	4290	0.1207		0.0715	4340	29524.756788094885	4405.507805902991	24624	1133	4160.999999999999	129.78268278009503	260	24364	1121	0	0	6	2	4	0	258.85	3871.20	126.72	0	0	1.75	0.07	0.12	0	260.00	3901.00	127.83	0	0	1.75	0.07	0.13	0	258.85	24179.07	1109.80	0	0	5.97	1.97	3.79	0	human clinical samples	USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio	Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix	Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis								0.9800133849165423	
species	Acinetobacter oleivorans	2846		1148157	23999	2846.65	561.31	1793010	22295	365923	4.9000		0.7688	0.0007	2846	0.0881		0.1672	2286	681.0453969963407	601.3766964078105	568	23431	568.0	2278.647880507865	568	0	23190	117	0	100	13	11	0	561.31	0	2223.98	7.26	0	5.98	0.82	0.62	0	568.00	0	2263.89	7.29	0	6.02	0.82	0.62	0	561.31	0	22808.48	116.51	0	99.40	12.89	10.95	0												0.7688426578830756	
species	Lactobacillus gasseri	1363		1596	1408	1363.83	1341.91	105381	342	101631	1.0369		0.9823	0.0003	1363	0.0536		0.1756	1384	1617.4828178663092	1428.26965396855	1349	59	1349.0	14.831782106782102	1349	0	57	0	0	2	0	0	0	1341.91	0	14.45	0	0	0.28	0	0	0	1349.00	0	14.55	0	0	0.28	0	0	0	1341.91	0	56.63	0	0	1.99	0	0	0												0.9822584219816944	
species	Serratia marcescens	420		615	438	420.07	411.79	32777	254	32515	1.0081	Pathogen	0.9836	0.0001	420	0.0062		0.0196	431	501.19185905716625	440.4449044113542	418	20	416.0	4.073185237701367	414	4	11	0	8	1	0	0	0	409.81	1.98	3.10	0	0.83	0.11	0	0	0	414.00	2.00	3.12	0	0.84	0.11	0	0	0	409.81	3.96	10.93	0	7.93	1.00	0	0	0	Respiratory	USA:Virginia; South Korea; Mexico	Homo sapiens	Septicaemia; abscesses; burn infections; osteomyelitis								0.9836095874655515	
species	Staphylococcus haemolyticus	351		1283	1109	351.63	80.95	82626	780	22643	3.6491	Pathogen	0.8398	0.0001	351	0.0084		0.0319	232	98.3199340734154	86.8184667349304	82	1027	82.0	269.6324890689247	82	0	982	31	11	3	0	0	0	80.95	0	260.94	3.41	0.59	0.18	0	0	0	82.00	0	265.42	3.42	0.61	0.18	0	0	0	80.95	0	965.91	30.92	10.55	2.96	0	0	0	blood	Brazil: Sao Paulo	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.839769336683662	
species	Acinetobacter sp. ADP1	181		62977	2343	181.24	23.71	174756	1237	40417	4.3238		0.7799	0.0000	181	0.0112		0.0123	154	28.77656607026792	25.410282946808895	24	2319	24.0	157.2431451073866	24	0	2063	128	0	102	14	12	0	23.71	0	139.72	7.95	0	6.04	0.88	0.70	0	24.00	0	141.60	7.98	0	6.07	0.89	0.70	0	23.71	0	2035.08	127.47	0	101.55	13.84	11.95	0												0.7799459980029556	
species	Staphylococcus warneri	112		1292	602	112.22	1.99	44807	384	17648	2.5389	Pathogen	0.7982	0.0000	112	0.0071		0.0110	64	2.3980471725223267	2.1175235789007414	2	600	2.0	110.22098702944619	2	0	580	10	2	8	0	0	0	1.99	0	105.77	1.01	0.18	1.09	0	0	0	2.00	0	107.93	1.01	0.18	1.10	0	0	0	1.99	0	570.40	10.00	2.00	7.92	0	0	0			Bos taurus; Culex quinquefasciatus; gallus gallus; Homo sapiens; medicago truncatula; Musca domestica; Nicotiana glauca; Phaseolus vulgaris; prunus dulcis; Sus scrofa; Zea mays	infection								0.7982027823935166	
species	Cardiovirus A	15		1821749	113	15.60	6.84	8423	111	858	9.8170		0.4114	0.0000	15	0.0156		0.0693	17	58.752155726797	7.411332526152593	49	64	6.999999999999999	8.6	0	49	0	0	0	0	0	0	64	0	6.84	0	0	0	0	0	0	8.45	0	7.00	0	0	0	0	0	0	8.60	0	47.88	0	0	0	0	0	0	62.95												0.41144660802562244	
strain	Deinococcus radiodurans R1	1397068		243230	1400750	1397068.73	1384826.73	104845727	575576	3041014	34.4772		0.9653	0.3402	1397068	0.9935		111.3358	1398871	15100078.570598327	2581032.291719091	1396668	4082	1395233.0	1835.7275917494946	1396668	0	3905	0	2	40	0	135	0	1384826.73	0	1762.90	0	0.64	8.68	0	46.22	0	1395233.00	0	1779.32	0	0.67	8.79	0	46.95	0	1386224.65	0	3869.48	0	1.93	39.60	0	133.01	0												0.9653360347352211	
strain	Bacteroides vulgatus ATCC 8482	473049		435590	478471	473049.33	465687.55	35819302	131425	5148492	6.9572	Pathogen	0.9306	0.1152	473049	0.9972		22.3494	475702	5062615.447354356	866234.7743960794	468262	10209	468262.0	4787.325019523821	468262	0	7717	0	2467	0	19	6	0	465687.55	0	3634.45	0	1122.06	0	3.35	0.35	0	468262.00	0	3655.28	0	1128.34	0	3.36	0.35	0	465687.55	0	7672.88	0	2453.03	0	18.91	6.00	0	NA	NA	Homo sapiens	commensal; sepsis; abscess or surgical infections								0.9305901170753375	
strain	Clostridium beijerinckii NCIMB 8052	201367		290402.1	202850	201367.62	199463.61	15186423	48305	5476683	2.7729		0.9696	0.0490	201367	0.9127		8.1860	201987	2167252.024178258	370825.9273780262	200458	2392	200458.0	909.6201011406895	200458	0	2308	31	30	0	17	6	0	199463.61	0	892.16	3.16	3.45	0	4.91	0.52	0	200458.00	0	897.48	3.20	3.48	0	4.94	0.52	0	199463.61	0	2294.45	30.84	29.76	0	16.91	6.00	0												0.9696091890975713	
strain	Staphylococcus epidermidis ATCC 12228	116115		176280	207060	116115.63	28154.51	15499677	50963	2470206	6.2746	Pathogen	0.9807	0.0283	116115	0.9884		11.3332	127570	305879.00841099524	52337.18353659677	28292	178768	28292.0	87823.62684167789	28292	171666	6964	91	35	10	1	1	0	28154.51	85382.58	1950.27	20.08	7.42	1.66	0.09	0.33	0	28292.00	85833.00	1960.90	20.18	7.45	1.67	0.09	0.33	0	28154.51	170765.16	6925.76	90.67	34.85	9.92	0.99	1.00	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9807441749311485	
strain	Staphylococcus epidermidis RP62A	86774		176279	175754	86774.65	92.31	13154555	64554	2204276	5.9677	Pathogen	0.9749	0.0211	86774	0.8424		8.0899	76677	1005.4696657084178	172.04008443742046	93	175661	93.0	86681.6513123132	93	171666	3884	60	37	11	2	1	0	92.31	85238.39	822.66	9.65	7.55	1.69	0.18	0.33	0	93.00	85833.00	829.14	9.71	7.58	1.70	0.18	0.33	0	92.31	170476.79	3853.91	59.65	36.80	10.92	1.97	1.00	0	patient with intravascular catheter-associated sepsis	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.974898018345925	
strain	Rhodobacter sphaeroides 2.4.1	62333		272943	112402	62333.62	29982.12	8413468	49175	3392564	2.4800		0.9827	0.0152	62333	0.8211		3.6803	81057	327761.4880173806	55876.029574540706	30316	82086	30205.0	32128.616305344956	30316	81875	40	85	0	70	13	3	0	29982.12	31830.97	7.79	17.92	0	13.28	2.95	0.57	0	30205.00	32085.58	7.86	18.14	0	13.46	2.98	0.59	0	30091.72	81223.68	39.61	84.03	0	69.16	12.88	2.83	0												0.9827275277876827	
strain	Acinetobacter baumannii D1279779	47301		945556	360906	47301.02	8229.44	27019592	235394	3014230	8.9640	Pathogen	0.9738	0.0115	47301	0.8137		3.1149	59427	89627.34977121273	15335.61612888404	8290	352616	8290.0	39011.02039261512	8290	317521	34837	124	0	106	15	13	0	8229.44	35472.43	3101.94	7.75	0	6.58	0.94	0.75	0	8290.00	35859.48	3135.44	7.78	0	6.62	0.95	0.75	0	8229.44	314139.56	34497.03	123.44	0	105.36	14.87	12.95	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9738308289954181	
strain	Acinetobacter baumannii ZW85-1	45467		1400867	362151	45467.78	6369.97	27113080	239516	3043333	8.9090	Pathogen	0.9731	0.0111	45467	0.8087		2.9475	56907	69409.84143922626	11876.315506325154	6420	355731	6420.0	39047.78244151399	6420	321144	34324	125	0	114	13	11	0	6369.97	35574.38	3028.03	7.75	0	7.06	0.80	0.64	0	6420.00	35970.58	3060.86	7.78	0	7.10	0.81	0.64	0	6369.97	317691.39	33991.15	124.51	0	113.32	12.89	10.96	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9731138843464292	
strain	Acinetobacter baumannii BJAB0715	44468		1096996	356441	44468.77	6524.72	26684683	236775	3007749	8.8720	Pathogen	0.9732	0.0108	44468	0.7516		2.7108	54618	71074.81271362514	12161.199087006476	6574	349867	6574.0	37894.76527148932	6574	315264	34347	109	0	118	16	13	0	6524.72	34323.73	3138.00	6.69	0	7.20	1.04	0.75	0	6574.00	34707.05	3171.95	6.71	0	7.25	1.05	0.75	0	6524.72	311848.93	34010.29	108.68	0	117.29	15.91	12.95	0	cerebrospinal fluid	China: Beijing	Homo sapiens	Nosocomial infections								0.9732414479876755	
strain	Helicobacter pylori 26695	39737		85962	281709	39737.03	1.99	21091663	72992	3313672	6.3650	Pathogen	0.9893	0.0097	39737	0.9934		2.9059	54086	32.43450534543283	3.699786762095064	3	281706	2.0	39735.03197280177	3	279130	2553	8	9	0	0	6	0	1.99	39372.15	169.16	0.29	0.33	0	0	0.74	0	2.00	39563.43	170.23	0.29	0.33	0	0	0.75	0	2.99	277687.23	2535.84	7.97	8.97	0	0	5.95	0	Gastric biopsy	Mexico; Australia: Perth; Taiwan: Taipei	Homo sapiens	Gastric ulcer								0.9892831598888395	
strain	Methanobrevibacter smithii ATCC 35061	36410		420247	36424	36410.71	36216.87	2726869	8900	1408081	1.9366		0.9227	0.0089	36410	0.7598		4.7929	36418	393549.47635970014	67337.9689635112	36401	23	36401.0	9.708333333333332	36401	0	16	7	0	0	0	0	0	36216.87	0	7.40	2.18	0	0	0	0	0	36401.00	0	7.50	2.21	0	0	0	0	0	36216.87	0	15.79	6.93	0	0	0	0	0												0.9226925382587349	
strain	Acinetobacter baumannii AB0057	34869		480119	349395	34869.22	79.31	26157235	234547	2940990	8.8940	Pathogen	0.9701	0.0085	34869	0.7261		2.1000	33752	864.9201425448755	147.99147048380257	80	349315	80.0	34789.22039383945	80	315166	33884	128	0	109	17	11	0	79.31	31689.39	2705.35	7.96	0	6.72	1.07	0.63	0	80.00	32038.52	2734.24	8.00	0	6.76	1.08	0.63	0	79.31	311744.53	33548.36	127.44	0	108.35	16.88	10.97	0	bloodstream infection of a patient at Walter Reed Army Medical Center	Walter Reed Army Medical Center	Homo sapiens	Nosocomial infections								0.9700724296932646	
strain	Acinetobacter baumannii AB307-0294	34545		557600	349404	34545.62	129.07	26158227	234141	2933513	8.9170	Pathogen	0.9685	0.0084	34545	0.7800		2.2406	33480	1405.4952316354227	240.48613953617917	130	349274	130.0	34415.619754158375	130	314901	34100	126	0	120	17	10	0	129.07	31297.25	2726.79	7.88	0	7.42	1.09	0.56	0	130.00	31642.96	2755.62	7.91	0	7.46	1.10	0.57	0	129.07	311488.35	33765.39	125.59	0	119.28	16.85	9.96	0	the blood of a hospitalized patient	USA: Buffalo NY	Homo sapiens	Nosocomial infections								0.9684796101927365	
strain	Acinetobacter baumannii AYE	34180		509173	347975	34180.79	10.92	26051099	232561	2919659	8.9227	Pathogen	0.9733	0.0083	34180	0.7417		2.1182	33163	118.92651959992038	20.34882719152285	11	347964	11.0	34169.78584254192	11	313902	33792	131	0	112	17	10	0	10.92	31121.59	2661.65	8.15	0	6.91	1.07	0.58	0	11.00	31463.48	2689.51	8.18	0	6.96	1.08	0.58	0	10.92	310505.49	33462.21	130.45	0	111.29	16.85	9.95	0	Human clinical samples	NA	Homo sapiens	Nosocomial infections								0.9733058468718302	
strain	Acinetobacter baumannii 1656-2	32340		696749	360549	32340.10	227.84	26991833	235362	3004485	8.9838	Pathogen	0.9710	0.0079	32340	0.7624		2.0020	28471	2486.6454098165173	425.47547764093235	230	360319	230.0	32110.095338867737	230	325618	34436	126	0	114	15	10	0	227.84	29202.59	2549.92	7.84	0	7.09	0.95	0.58	0	230.00	29518.14	2575.41	7.87	0	7.13	0.96	0.58	0	227.84	322154.85	34106.57	125.47	0	113.35	14.89	9.97	0	Human clinical samples	NA	Homo sapiens	Nosocomial infections								0.9710343832464724	
strain	Acinetobacter baumannii BJAB07104	31878		1096995	359650	31878.15	587.11	26925244	235679	2995329	8.9891	Pathogen	0.9699	0.0078	31878	0.7579		1.9677	27339	6389.597553050267	1093.2869881990914	591	359059	591.0	31287.153889102323	591	324315	34479	128	0	107	18	12	0	587.11	28393.24	2545.32	7.98	0	6.47	1.14	0.69	0	591.00	28700.02	2570.77	8.01	0	6.50	1.15	0.69	0	587.11	320861.33	34148.77	127.48	0	106.37	17.85	11.95	0	Blood	China: Beijing	Homo sapiens	Nosocomial infections								0.9698849526985913	
strain	Acinetobacter baumannii MDR-TJ	31823		889738	360789	31823.52	283.13	27010308	236364	3000972	9.0005	Pathogen	0.9713	0.0077	31823	0.7569		1.9579	26779	3081.278007816119	527.2196135985466	285	360504	285.0	31538.522157370848	285	325521	34720	124	0	110	16	13	0	283.13	28603.88	2583.31	7.74	0	6.77	1.03	0.75	0	285.00	28913.01	2609.14	7.77	0	6.82	1.04	0.75	0	283.13	322053.19	34387.97	123.48	0	109.35	15.85	12.95	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9713469839371183	
strain	Acinetobacter baumannii ACICU	31811		405416	356013	31811.52	450.99	26652170	234783	2978313	8.9487	Pathogen	0.9693	0.0077	31811	0.7629		1.9877	28120	4908.421808942168	839.8515949955795	454	355559	454.0	31357.523488800874	454	320885	34417	126	0	110	12	9	0	450.99	28441.56	2562.03	7.87	0	6.69	0.73	0.50	0	454.00	28753.77	2587.88	7.90	0	6.73	0.74	0.50	0	450.99	317439.49	34085.65	125.47	0	109.35	11.91	8.97	0	outbreak	Rome	Homo sapiens	Nosocomial infections								0.9692569222657831	
strain	Acinetobacter baumannii BJAB0868	31332		1096997	357755	31332.81	138.11	26783235	234691	2980568	8.9859	Pathogen	0.9699	0.0076	31332	0.7629		1.9564	26867	1502.7987476717212	257.13517996560694	139	357616	139.0	31193.8104477183	139	322887	34466	125	0	112	16	10	0	138.11	28289.67	2556.28	7.79	0	6.74	1.00	0.57	0	139.00	28595.58	2582.05	7.82	0	6.78	1.01	0.57	0	138.11	319446.75	34134.04	124.47	0	111.41	15.85	9.96	0	ascites	China: Beijing	Homo sapiens	Nosocomial infections								0.9698935903620748	
strain	Acinetobacter baumannii TYTH-1	30960		1100841	352282	30960.14	252.64	26373683	230313	2990727	8.8185	Pathogen	0.9702	0.0075	30960	0.7557		1.9084	27905	2746.1214525799796	469.8729187860731	254	352028	254.0	30706.144307649192	254	317839	33958	108	0	99	15	9	0	252.64	27849.73	2517.30	6.72	0	5.98	0.96	0.49	0	254.00	28149.70	2542.21	6.75	0	6.02	0.97	0.50	0	252.64	314460.29	33635.60	107.49	0	98.41	14.85	8.97	0	Bodily fluid; human clinical samples	Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China	Homo sapiens	Nosocomial infections								0.9702019406880071	
strain	Acinetobacter baumannii MDR-ZJ06	30949		497978	355092	30949.52	90.16	26583630	233303	2961137	8.9775	Pathogen	0.9692	0.0075	30949	0.7419		1.8916	26444	983.8466621447959	168.34029767532542	91	355001	91.0	30858.517423465288	91	320288	34453	123	0	110	17	10	0	90.16	27967.85	2546.09	7.71	0	6.71	1.08	0.56	0	91.00	28270.69	2571.67	7.74	0	6.75	1.09	0.57	0	90.16	316867.76	34121.16	122.45	0	109.36	16.85	9.95	0	Human clinical samples	NA	Homo sapiens	Nosocomial infections								0.969197710937063	
strain	Streptococcus mutans UA159	30172		210007	91392	30172.08	5340.24	6841111	23260	1945889	3.5157	Pathogen	0.9692	0.0073	30172	0.9572		3.6204	40291	58014.518561197525	9926.527882701055	5366	86026	5366.0	24806.080245510355	5366	84649	1346	4	20	2	5	0	0	5340.24	24432.86	237.56	0.24	2.30	0.27	0.35	0	0	5366.00	24563.92	238.94	0.25	2.35	0.28	0.35	0	0	5340.24	84195.84	1338.01	3.97	19.67	1.95	5.00	0	0	child with active dental caries	NA	Homo sapiens	Dental caries								0.9692248398480202	
strain	Propionibacterium acnes KPA171202	27655		267747	187064	27655.97	229.37	14003534	68448	2529733	5.5356	Pathogen	0.9432	0.0067	27655	0.9881		2.6350	34826	2497.456911598328	427.3253710219799	231	186833	231.0	27424.96972385205	231	185483	3	1221	2	110	6	8	0	229.37	27095.82	0.27	121.81	0.18	22.28	0.45	0.55	0	231.00	27278.37	0.27	122.76	0.18	22.39	0.45	0.55	0	229.37	184232.07	2.93	1211.57	2.00	109.28	5.93	7.99	0			Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus	Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis								0.9432117720826377	
strain	Staphylococcus aureus subsp. aureus ST228	26941		1074919	764743	26941.65	8.87	57250566	281889	17042473	3.3593	Pathogen	0.9841	0.0066	26941	0.7720		0.2977	24875	778.4281282903879	16.649040429427785	72	764671	9.0	26932.647861298126	72	738606	25920	75	50	20	0	0	0	8.87	25826.48	918.72	2.74	1.89	0.65	0	0	0	9.00	26000.93	926.37	2.75	1.93	0.67	0	0	0	70.93	733655.96	25712.52	74.57	49.13	19.24	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.984104935476126	
strain	Rhodobacter sphaeroides ATCC 17029	26772		349101	71281	26772.35	2.84	5333562	59609	2401304	2.2211		0.9451	0.0065	26772	0.5499		1.4956	17514	32.43450534543283	5.549680143142595	3	71278	3.0	26769.34963867832	3	71070	48	81	0	67	9	3	0	2.84	26361.11	8.99	16.67	0	12.25	1.81	0.56	0	3.00	26728.48	9.11	16.91	0	12.42	1.83	0.59	0	2.84	70111.44	47.39	79.91	0	66.09	8.89	2.81	0												0.9451326254021094	
strain	Enterococcus faecalis OG1RF	23608		474186	66760	23608.94	6132.88	4997249	17603	2268373	2.2030		0.9532	0.0057	23608	0.8280		2.1021	32010	66663.71998664629	11406.44258753908	6166	60594	6166.0	17442.937476546747	6166	60380	104	49	40	18	0	3	0	6132.88	17320.51	14.84	5.62	4.94	1.64	0	0.37	0	6166.00	17415.33	14.93	5.66	4.98	1.67	0	0.37	0	6132.88	60049.91	103.33	48.67	39.68	17.81	0	3.00	0												0.9532152672184029	
strain	Rhodobacter sphaeroides KD131	22117		557760	61907	22117.97	1.92	4631761	54539	2116020	2.1889		0.9412	0.0054	22117	0.4755		1.2123	13032	21.62300356362189	3.699786762095064	2	61905	2.0	22115.967820496517	2	61710	48	76	0	60	8	3	0	1.92	21760.55	8.90	15.22	0	10.75	1.44	0.56	0	2.00	22078.47	9.03	15.48	0	10.91	1.50	0.59	0	1.92	60835.83	47.35	74.76	0	59.21	7.76	2.80	0												0.9412088453992346	
strain	Streptococcus mutans GS-5	21854		1198676	79207	21854.48	4.91	5927710	35653	1755224	3.3772	Pathogen	0.9425	0.0053	21854	0.8659		2.6299	19364	54.05750890905472	9.24946690523766	5	79202	5.0	21849.47866805552	5	78013	1160	4	19	2	4	0	0	4.91	21486.31	180.65	0.24	2.14	0.27	0.28	0	0	5.00	21664.42	182.11	0.25	2.15	0.28	0.28	0	0	4.91	77376.60	1150.48	3.97	18.85	1.95	4.00	0	0	NA	NA	Homo sapiens	Dental caries								0.9424500827073538	
strain	Streptococcus pneumoniae TIGR4	19225		170187	182994	19225.94	6291.95	13701112	46919	2148592	6.3768	Pathogen	0.9882	0.0047	19225	0.9943		2.1704	31959	68350.31426460878	11695.025954982497	6322	176672	6322.0	12903.93898571852	6322	141155	35481	4	3	0	14	15	0	6291.95	10852.74	1985.28	0.15	0.11	0	0.70	0.55	0	6322.00	10906.39	1996.04	0.15	0.11	0	0.70	0.55	0	6291.95	140445.23	35282.92	3.97	2.99	0	13.88	14.97	0	the blood of a 30 year old male patient	Kongsvinger; Norway	Homo sapiens	Pneumonia; Meningitis; Bacteremia; Sinusitis; Otitis media; Conjunctivitis								0.9881990545576192	
strain	Neisseria meningitidis MC58	17645		122586	116392	17645.45	673.05	8713331	38494	2166803	4.0213	Pathogen	0.9854	0.0043	17645	0.9535		1.8942	25219	7319.386706286009	1252.377818969179	677	115715	677.0	16968.448132129954	677	75291	39887	0	74	55	380	28	0	673.05	13300.36	3509.56	0	4.77	3.13	44.89	1.59	0	677.00	13381.20	3532.51	0	4.81	3.14	45.18	1.60	0	673.05	74831.13	39626.57	0	73.47	54.76	377.64	27.87	0	human clinical samples		Homo sapiens	meningococcal disease								0.9854421727740429	
strain	Neisseria meningitidis H44/76	16113		909420	111659	16113.07	4.99	8358445	39168	2078259	4.0218	Pathogen	0.9838	0.0039	16113	0.9274		1.7540	21771	54.05750890905472	9.24946690523766	5	111654	5.0	16108.065274639746	5	72153	38975	0	74	52	374	26	0	4.99	12570.07	3381.62	0	4.76	2.99	44.01	1.53	0	5.00	12649.78	3404.67	0	4.79	3.00	44.29	1.54	0	4.99	71687.40	38708.48	0	73.51	51.77	371.68	25.87	0	human clinical samples		Homo sapiens	meningococcal disease								0.983842563267889	
strain	Bacillus cereus ATCC 10987	15375		222523	39361	15375.20	7339.91	2946475	10094	2217980	1.3284	Pathogen	0.9816	0.0037	15375	0.4246		0.7179	21958	79734.8256408557	13642.963685225548	7375	31986	7375.0	8000.203970614922	7375	11930	19976	1	3	0	76	0	0	7339.91	5002.41	2921.49	0.03	0.10	0	34.84	0	0	7375.00	5027.64	2937.43	0.03	0.10	0	35.00	0	0	7339.91	11869.41	19862.96	1.00	2.85	0	75.61	0	0	NA	Canada	Homo sapiens	Food poisoning								0.9816209728445735	
strain	Propionibacterium acnes subsp. defendens ATCC 11828	13678		1091045	102977	13678.85	1.99	7705526	77423	1727504	4.4605	Pathogen	0.9049	0.0033	13678	0.6942		1.3408	11122	21.62300356362189	3.699786762095064	2	102975	2.0	13676.852555932275	2	101804	3	1100	2	54	6	6	0	1.99	13414.24	0.27	101.53	0.18	3.68	0.44	0.44	0	2.00	13569.18	0.27	102.60	0.18	3.73	0.45	0.44	0	1.99	100547.31	2.92	1088.59	2.00	53.35	5.91	5.99	0			Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus	Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis								0.9049233028002609	
strain	Listeria monocytogenes EGD-e	9110		169963	97589	9110.97	1330.64	7304974	25484	2651226	2.7553	Pathogen	0.9896	0.0022	9110	0.9004		0.7548	11231	14465.789384063042	2475.1573438415976	1338	96251	1338.0	7772.96564202103	1338	91081	5167	0	1	1	0	1	0	1330.64	7412.68	318.96	0	0.03	0.03	0	0.19	0	1338.00	7451.69	321.01	0	0.03	0.03	0	0.20	0	1330.64	90591.60	5134.67	0	1.00	0.99	0	0.97	0	human clinical samples		apodemus agrarius; apodemus peninsulae; Bos taurus; Capra hircus; cavia porcellus; Cervus elaphus; chinchilla brevicaudata; Homo sapiens; lama pacos; microtus arvalis; myodes glareolus; myodes rufocanus; myodes rutilus; oryctolagus cuniculus; Ovis aries; rattus rattus; Sus scrofa; vulpes lagopus	listerosis								0.9895830677516305	
strain	Neisseria meningitidis M04-240196	9021		935593	83797	9021.48	2.99	6269186	42610	1669913	3.7542	Pathogen	0.9725	0.0022	9021	0.7420		0.9779	9117	32.43450534543283	5.549680143142595	3	83794	3.0	9018.481993335557	3	50819	32557	0	75	50	270	23	0	2.99	6463.81	2444.20	0	4.83	2.77	21.08	1.00	0	3.00	6521.12	2467.41	0	4.87	2.78	21.30	1.01	0	2.99	50353.49	32249.87	0	74.45	49.81	267.47	22.93	0	human clinical samples		Homo sapiens	meningococcal disease								0.9724951969196952	
strain	Bacillus cereus FRI-35	6672		1217984	27220	6672.11	10.97	2037032	12579	1551160	1.3132	Pathogen	0.9557	0.0016	6672	0.3052		0.3202	7000	118.92651959992038	20.34882719152285	11	27209	11.0	6661.108862258228	11	10530	16675	1	3	0	0	0	0	10.97	4452.79	2150.58	0.03	0.10	0	0	0	0	11.00	4492.19	2168.78	0.03	0.10	0	0	0	0	10.97	10437.79	16540.09	1.00	2.85	0	0	0	0	NA	NA	Homo sapiens	Anthrax-like illness								0.9556660046054299	
strain	Escherichia coli DH1	6250		536056	123149	6250.50	1.00	9218311	38494	5577098	1.6529	Pathogen	0.9814	0.0015	6250	0.6028		0.1648	7092	10.811501781810945	1.849893381047532	1	123148	1.0	6249.502923115059	1	42056	1619	79296	46	13	5	4	109	1.00	3068.16	116.43	3018.83	2.99	0.59	0.16	0.47	4.55	1.00	3085.78	117.18	3037.73	3.01	0.60	0.16	0.47	4.57	1.00	41815.03	1608.24	78797.23	45.61	12.87	5.00	4.00	108.59	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9813950466853409	
strain	Neisseria meningitidis M01-240355	6204		935588	69805	6204.50	1.00	5220060	40920	1468998	3.5535	Pathogen	0.9636	0.0015	6204	0.6421		0.6616	5385	10.811501781810945	1.849893381047532	1	69804	1.0	6203.5035085836635	1	39778	29689	0	70	50	202	15	0	1.00	4041.99	2071.27	0	4.41	2.73	13.45	0.62	0	1.00	4088.14	2093.92	0	4.45	2.75	13.62	0.62	0	1.00	39342.33	29378.03	0	69.44	49.77	199.68	14.95	0	human clinical samples		Homo sapiens	meningococcal disease								0.9636217259407861	
strain	Neisseria meningitidis G2136	5887		935599	67798	5887.60	2.97	5069819	39877	1428953	3.5479	Pathogen	0.9630	0.0014	5887	0.6540		0.6573	5036	32.43450534543283	5.549680143142595	3	67795	3.0	5884.598425937022	3	38149	29310	0	72	48	199	17	0	2.97	3790.66	2007.19	0	4.58	2.76	13.26	0.66	0	3.00	3833.73	2029.43	0	4.61	2.78	13.38	0.66	0	2.97	37730.52	28998.97	0	71.52	47.80	197.15	16.96	0	human clinical samples		Homo sapiens	meningococcal disease								0.9630477778788323	
strain	Staphylococcus aureus subsp. aureus ST72	5594		1196216	103796	5594.84	632.77	7770599	35310	2202003	3.5289	Pathogen	NA	0.0014	5594	0.8004		0.4961	7686	6876.11513323176	1176.5321903462302	636	103160	636.0	4958.842220588574	636	97024	6119	8	4	5	0	0	0	632.77	4251.42	673.64	0.32	0.17	0.16	0	0	0	636.00	4279.00	679.19	0.32	0.17	0.17	0	0	0	632.77	96415.64	6072.03	7.99	3.99	4.77	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								NA	
strain	Staphylococcus aureus subsp. aureus CN1	5594		1193576	103796	5594.84	632.77	7770599	35310	2202003	3.5289	Pathogen	0.9776	0.0014	5594	0.8004		0.4961	7686	6876.11513323176	1176.5321903462302	636	103160	636.0	4958.842220588574	636	97024	6119	8	4	5	0	0	0	632.77	4251.42	673.64	0.32	0.17	0.16	0	0	0	636.00	4279.00	679.19	0.32	0.17	0.17	0	0	0	632.77	96415.64	6072.03	7.99	3.99	4.77	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9775737370508415	
strain	Staphylococcus aureus subsp. aureus 11819-97	4663		1123523	97898	4663.85	371.55	7329198	34074	2147193	3.4134	Pathogen	0.9833	0.0011	4663	0.7543		0.3997	6120	4043.501666397293	691.8601245117769	374	97524	374.0	4289.854398103149	374	93442	4065	10	6	1	0	0	0	371.55	4017.56	242.81	0.38	0.24	0.03	0	0	0	374.00	4044.40	244.79	0.38	0.25	0.03	0	0	0	371.55	92847.77	4032.21	9.97	5.89	0.92	0	0	0	skin abscess	Denmark	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9833106029374297	
strain	Acinetobacter pittii PHEA-2	4559		871585	34667	4559.06	954.35	2591018	32884	494999	5.2344		0.7627	0.0011	4559	0.1282		0.2879	3821	10422.28771766575	1783.2972193298208	964	33703	964.0	3595.064835375318	964	0	33580	61	0	46	9	7	0	954.35	0	3526.59	3.67	0	2.68	0.54	0.38	0	964.00	0	3587.76	3.68	0	2.70	0.54	0.38	0	954.35	0	33031.88	60.71	0	45.68	8.87	6.97	0												0.7627200132084588	
strain	Staphylococcus aureus subsp. aureus str. Newman	4309		426430	102052	4309.45	16.88	7639736	36810	2222432	3.4376	Pathogen	0.9830	0.0010	4309	0.7720		0.3652	4261	183.79553029078605	31.44818747780804	17	102035	17.0	4292.446921555676	17	98273	3739	13	8	2	0	0	0	16.88	4115.73	146.96	0.49	0.29	0.06	0	0	0	17.00	4143.46	148.14	0.49	0.30	0.07	0	0	0	16.88	97622.25	3710.49	12.92	7.88	1.92	0	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9830425800869109	
strain	Staphylococcus aureus subsp. aureus MSSA476	4091		282459	96856	4091.47	1.00	7250832	33634	2130700	3.4030	Pathogen	0.9836	0.0010	4091	0.7610		0.3565	4806	10.811501781810945	1.849893381047532	1	96855	1.0	4090.47131176055	1	93511	3318	13	9	4	0	0	0	1.00	3917.17	145.05	0.48	0.34	0.13	0	0	0	1.00	3943.25	146.25	0.48	0.35	0.13	0	0	0	1.00	92910.55	3292.03	12.93	8.88	3.92	0	0	0	community acquired	United Kingdom	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9835637130114102	
strain	Staphylococcus aureus subsp. aureus NCTC 8325	3848		93061.1	99152	3848.50	6.00	7422490	35328	2179122	3.4062	Pathogen	0.9832	0.0009	3848	0.7724		0.3327	3739	64.86901069086566	11.09936028628519	6	99146	6.0	3842.5032899880143	6	95906	3220	10	7	1	0	2	0	6.00	3692.35	123.46	0.37	0.27	0.03	0	0.24	0	6.00	3717.08	124.51	0.37	0.27	0.03	0	0.24	0	6.00	95275.80	3193.87	9.97	6.93	0.92	0	2.00	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9832066794042962	
strain	Staphylococcus aureus subsp. aureus TW20	3511		663951	90272	3511.35	2.99	6757710	32952	2063158	3.2754	Pathogen	0.9854	0.0009	3511	0.6780		0.2815	3310	32.43450534543283	5.549680143142595	3	90269	3.0	3508.345898993706	3	87016	3239	9	4	1	0	0	0	2.99	3345.47	138.46	0.32	0.16	0.03	0	0	0	3.00	3368.22	139.62	0.32	0.16	0.03	0	0	0	2.99	86433.56	3213.12	8.93	3.99	0.85	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9854462394574536	
strain	Staphylococcus aureus Bmb9393	3479		1321369	89251	3479.36	60.63	6681123	32679	2056648	3.2485	Pathogen	0.9848	0.0008	3479	0.6900		0.2848	3168	659.5016086904676	112.84349624389944	61	89190	61.0	3418.3554240446324	61	86006	3176	1	3	4	0	0	0	60.63	3259.71	134.63	0.03	0.10	0.13	0	0	0	61.00	3282.31	135.78	0.03	0.10	0.13	0	0	0	60.63	85427.88	3149.71	0.99	2.95	3.77	0	0	0	patient with blood stream infection	Brazil: Rio de Janeiro	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.984780251805994	
strain	Staphylococcus aureus subsp. aureus str. JKD6008	3446		546342	89302	3446.69	32.85	6685164	32676	2052405	3.2572	Pathogen	0.9856	0.0008	3446	0.7018		0.2875	3264	356.77955879976116	61.04648157456855	33	89269	33.0	3413.6913136885382	33	86053	3198	7	8	3	0	0	0	32.85	3269.56	120.05	0.28	0.31	0.10	0	0	0	33.00	3291.92	121.09	0.28	0.31	0.10	0	0	0	32.85	85477.36	3171.80	6.99	7.92	2.92	0	0	0	clinical isolate	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9856167417923385	
strain	Staphylococcus aureus subsp. aureus ED98	3419		681288	94943	3419.75	5.97	7107596	35033	2127158	3.3414	Pathogen	0.9831	0.0008	3419	0.7531		0.2954	3148	64.86901069086566	11.09936028628519	6	94937	6.0	3413.746293389514	6	92128	2796	9	2	2	0	0	0	5.97	3286.67	103.27	0.34	0.09	0.07	0	0	0	6.00	3309.13	104.12	0.34	0.09	0.07	0	0	0	5.97	91509.17	2772.76	8.93	2.00	2.00	0	0	0	broiler Gallus gallus	Northern Ireland	Gallus gallus	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.983107826467196	
strain	Staphylococcus aureus subsp. aureus HO 5096 0412	3173		1074252	74076	3173.72	147.71	5545201	27453	1778808	3.1174	Pathogen	0.9810	0.0008	3173	0.6280		0.2733	3808	1610.9137654898307	275.63411377608224	149	73927	149.0	3024.7205448897384	149	70143	3769	5	6	4	0	0	0	147.71	2806.66	194.54	0.16	0.21	0.13	0	0	0	149.00	2827.91	196.31	0.16	0.21	0.13	0	0	0	147.71	69669.99	3737.64	4.99	5.88	3.77	0	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.98102483613585	
strain	Staphylococcus aureus subsp. aureus JKD6159	2923		869816	59626	2923.88	350.25	4463395	23319	1544146	2.8905	Pathogen	0.9819	0.0007	2923	0.5492		0.2537	3072	3827.271630761074	654.8622568908263	354	59272	354.0	2569.8812956377806	354	55745	3519	3	2	3	0	0	0	350.25	2372.50	175.81	0.10	0.07	0.10	0	0	0	354.00	2392.16	177.46	0.10	0.07	0.10	0	0	0	350.25	55352.79	3490.13	2.99	2.00	2.85	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9818604429810369	
strain	Acinetobacter oleivorans DR1	2846		436717	23999	2846.65	561.31	1793010	22295	365923	4.9000		0.7688	0.0007	2846	0.0881		0.1672	2286	6140.933012068616	1050.7394404349982	568	23431	568.0	2278.647880507865	568	0	23190	117	0	100	13	11	0	561.31	0	2223.98	7.26	0	5.98	0.82	0.62	0	568.00	0	2263.89	7.29	0	6.02	0.82	0.62	0	561.31	0	22808.48	116.51	0	99.40	12.89	10.95	0												0.7688426578830756	
strain	Staphylococcus aureus subsp. aureus ED133	2795		685039	61481	2795.39	370.48	4602233	24095	1611962	2.8551	Pathogen	0.9826	0.0007	2795	0.5691		0.2407	2805	4032.690164615482	690.0102311307294	373	61108	373.0	2422.389457774339	373	58504	2597	5	1	1	0	0	0	370.48	2291.29	111.27	0.16	0.03	0.04	0	0	0	373.00	2309.46	112.70	0.16	0.03	0.04	0	0	0	370.48	58089.60	2574.81	4.95	1.00	1.00	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9825789596553703	
strain	Staphylococcus aureus CA-347	2642		1323661	54741	2642.18	52.68	4097581	21472	1431990	2.8615	Pathogen	0.9796	0.0006	2642	0.5024		0.2261	2776	573.00959443598	98.0443491955192	53	54688	53.0	2589.180041983284	53	50971	3705	5	6	1	0	0	0	52.68	2391.08	177.00	0.16	0.21	0.04	0	0	0	53.00	2410.19	178.58	0.16	0.22	0.04	0	0	0	52.68	50609.08	3674.57	4.93	5.85	1.00	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9796482018397779	
strain	Staphylococcus aureus subsp. aureus 6850	2603		1392476	61366	2603.53	109.87	4593673	24198	1597634	2.8753	Pathogen	0.9794	0.0006	2603	0.5838		0.2321	2646	1200.0766977810147	205.33816529627603	111	61255	111.0	2492.5274878864443	111	57704	3541	4	2	4	0	0	0	109.87	2283.78	188.40	0.13	0.07	0.13	0	0	0	111.00	2301.98	190.22	0.13	0.07	0.14	0	0	0	109.87	57294.25	3512.55	3.95	1.95	3.77	0	0	0	patient with a complicated S	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9794226137678197	
strain	Staphylococcus aureus subsp. aureus LGA251	2509		985006	60468	2509.40	70.55	4526442	23527	1589362	2.8480	Pathogen	0.9823	0.0006	2509	0.5778		0.2225	2578	767.616626508577	131.34243005437477	71	60397	71.0	2438.4014347008992	71	58249	2132	7	6	3	0	0	0	70.55	2337.71	80.55	0.23	0.20	0.09	0	0	0	71.00	2356.55	81.31	0.24	0.21	0.10	0	0	0	70.55	57837.57	2115.16	6.93	5.88	2.77	0	0	0	human clinical samples	USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9822751641809068	
strain	Staphylococcus aureus RF122	2434		273036	56806	2434.81	32.60	4252176	22612	1519876	2.7977	Pathogen	0.9806	0.0006	2434	0.5542		0.2166	2426	356.77955879976116	61.04648157456855	33	56773	33.0	2401.8050266621135	33	54579	2185	3	5	1	0	0	0	32.60	2278.02	103.83	0.10	0.18	0.03	0	0	0	33.00	2296.67	104.83	0.10	0.18	0.03	0	0	0	32.60	54185.57	2167.23	2.95	4.84	1.00	0	0	0	NA	NA	Homo sapiens	Mastitis								0.9805844602466917	
strain	Staphylococcus aureus subsp. aureus MRSA252	2259		282458	55404	2259.30	46.80	4147497	21494	1460496	2.8398	Pathogen	0.9788	0.0006	2259	0.5032		0.1899	2106	508.1405837451144	86.944988909234	47	55357	47.0	2212.3008320549216	47	51616	3729	7	3	2	0	0	0	46.80	2009.73	185.17	0.24	0.10	0.06	0	0	0	47.00	2024.95	186.94	0.24	0.11	0.06	0	0	0	46.80	51256.92	3697.84	6.96	2.93	1.92	0	0	0	hospital-acquired	United Kingdom	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9788460419510181	
strain	Staphylococcus aureus subsp. aureus 71193	2136		1155084	54782	2136.12	1.97	4100764	20971	1453424	2.8215	Pathogen	0.9800	0.0005	2136	0.5353		0.1919	1989	21.62300356362189	3.699786762095064	2	54780	2.0	2134.1163268606724	2	51741	3027	7	2	3	0	0	0	1.97	1981.54	135.90	0.24	0.07	0.10	0	0	0	2.00	1996.54	137.17	0.24	0.07	0.10	0	0	0	1.97	51381.41	3001.99	6.95	2.00	2.92	0	0	0	NA	NA	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.9799855201386025	
strain	Bacillus cereus Q1	1909		361100	14897	1909.41	1.00	1114526	9882	878618	1.2685	Pathogen	0.8830	0.0005	1909	0.1685		0.0893	1323	10.811501781810945	1.849893381047532	1	14896	1.0	1908.409879462102	1	2652	12241	0	3	0	0	0	0	1.00	643.16	1242.14	0	0.10	0	0	0	0	1.00	651.62	1256.69	0	0.10	0	0	0	0	1.00	2617.65	12107.08	0	2.85	0	0	0	0	Clinical sample (blood)	USA	Homo sapiens	Anthrax-like illness								0.8830012243454513	
strain	Pseudomonas aeruginosa M18	1723		941193	26616	1723.90	2.99	1992224	15842	1639107	1.2154	Pathogen	0.9791	0.0004	1723	0.2590		0.0665	1676	32.43450534543283	5.549680143142595	3	26613	3.0	1720.9049713845443	3	26311	252	17	0	4	29	0	0	2.99	1687.07	13.81	0.82	0	0.21	1.57	0	0	3.00	1704.32	13.96	0.83	0	0.21	1.59	0	0	2.99	26049.96	249.24	16.84	0	4.00	28.73	0	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9790694735716687	
strain	Pseudomonas aeruginosa B136-33	1497		1280938	23592	1497.71	11.79	1765627	16819	1461761	1.2079	Pathogen	0.9756	0.0004	1497	0.2277		0.0569	1129	129.73802138173133	22.19872057257038	12	23580	12.0	1485.7132495228147	12	23280	250	17	0	4	29	0	0	11.79	1451.87	13.54	0.82	0	0.25	1.60	0	0	12.00	1469.31	13.71	0.83	0	0.25	1.62	0	0	11.79	23009.09	247.04	16.87	0	3.99	28.67	0	0	human clinical samples	various	Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale	Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis								0.9756189830063579	
strain	Lactobacillus gasseri ATCC 33323 = JCM 1131	1363		324831	1408	1363.83	1341.91	105381	342	101631	1.0369		0.9823	0.0003	1363	0.0536		0.1756	1384	14584.715903662964	2495.5061710331206	1349	59	1349.0	14.831782106782102	1349	0	57	0	0	2	0	0	0	1341.91	0	14.45	0	0	0.28	0	0	0	1349.00	0	14.55	0	0	0.28	0	0	0	1341.91	0	56.63	0	0	1.99	0	0	0												0.9822584219816944	
strain	Helicobacter pylori F32	1064		102608	18590	1064.58	1.00	1390286	14283	458594	3.0316	Pathogen	0.9715	0.0003	1064	0.2905		0.1645	578	10.811501781810945	1.849893381047532	1	18589	1.0	1063.5832809828578	1	18123	457	4	4	0	1	0	0	1.00	1029.69	18.59	0.14	0.14	0	0.03	0	0	1.00	1044.45	18.82	0.15	0.14	0	0.03	0	0	1.00	17885.15	451.64	3.99	3.95	0	0.99	0	0	Gastric biopsy	Mexico; Australia: Perth; Taiwan: Taipei	Homo sapiens	Gastric ulcer								0.9715378075792924	
strain	Helicobacter pylori OK113	1056		1248725	18197	1056.59	1.00	1360774	14275	457936	2.9715	Pathogen	0.9710	0.0003	1056	0.2833		0.1594	544	10.811501781810945	1.849893381047532	1	18196	1.0	1055.590457036315	1	17795	393	3	5	0	0	0	0	1.00	1023.18	16.84	0.10	0.18	0	0	0	0	1.00	1038.28	17.03	0.10	0.18	0	0	0	0	1.00	17555.64	388.77	3.00	4.91	0	0	0	0	Gastric biopsy	Mexico; Australia: Perth; Taiwan: Taipei	Homo sapiens	Gastric ulcer								0.9709942058893484	
strain	Streptococcus agalactiae 2603V/R	1002		208435	4489	1002.96	252.92	336041	1152	307818	1.0917	Pathogen	0.9800	0.0002	1002	0.1425		0.1133	1295	2746.1214525799796	469.8729187860731	254	4235	254.0	748.961830091091	254	3901	328	0	0	5	1	0	0	252.92	678.14	65.28	0	0	1.58	0.03	0	0	254.00	681.70	65.65	0	0	1.58	0.03	0	0	252.92	3880.56	325.72	0	0	5.00	0.99	0	0	NA	NA	Homo sapiens	Septicemia; Pneumonia; Meningitis								0.9800133849165423	
strain	Streptococcus agalactiae serogroup V	1002		216466	4489	1002.96	252.92	336041	1152	307818	1.0917	Pathogen	NA	0.0002	1002	0.1425		0.1133	1295	2746.1214525799796	469.8729187860731	254	4235	254.0	748.961830091091	254	3901	328	0	0	5	1	0	0	252.92	678.14	65.28	0	0	1.58	0.03	0	0	254.00	681.70	65.65	0	0	1.58	0.03	0	0	252.92	3880.56	325.72	0	0	5.00	0.99	0	0	human clinical samples	USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio	Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix	Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis								NA	
strain	Escherichia coli O104:H4 str. 2009EL-2050	978		1134782	28473	978.73	1.00	2131389	10878	1457080	1.4628	Pathogen	0.9658	0.0002	978	0.2774		0.0454	926	10.811501781810945	1.849893381047532	1	28472	1.0	977.7288987142531	1	3935	145	24351	12	1	1	0	27	1.00	160.63	5.74	803.06	0.40	0.03	0.03	0	0.94	1.00	161.82	5.78	808.71	0.40	0.03	0.03	0	0.95	1.00	3906.52	143.93	24181.29	11.92	0.95	1.00	0	26.87	perirectal swab	USA	Homo sapiens	Gastroenteritis								0.9657919925465239	
strain	Listeria monocytogenes SLCC2376	809		882097	14421	809.41	1.00	1078736	8393	528158	2.0424	Pathogen	0.9688	0.0002	809	0.1860		0.0695	532	10.811501781810945	1.849893381047532	1	14420	1.0	808.4076480587826	1	11749	2669	0	1	1	0	0	0	1.00	690.66	108.66	0	0.03	0.03	0	0	0	1.00	698.63	109.72	0	0.03	0.03	0	0	0	1.00	11622.60	2645.64	0	1.00	1.00	0	0	0	human clinical samples		apodemus agrarius; apodemus peninsulae; Bos taurus; Capra hircus; cavia porcellus; Cervus elaphus; chinchilla brevicaudata; Homo sapiens; lama pacos; microtus arvalis; myodes glareolus; myodes rufocanus; myodes rutilus; oryctolagus cuniculus; Ovis aries; rattus rattus; Sus scrofa; vulpes lagopus	listerosis								0.9688482414172382	
strain	Helicobacter pylori Aklavik86	735		1055532	13053	735.82	1.87	975911	10457	337763	2.8893	Pathogen	0.9714	0.0002	735	0.2261		0.1201	369	21.62300356362189	3.699786762095064	2	13051	2.0	733.8217210424034	2	12641	403	2	5	0	0	0	0	1.87	706.11	16.43	0.07	0.18	0	0	0	0	2.00	716.96	16.61	0.07	0.18	0	0	0	0	1.87	12465.07	398.84	1.99	4.96	0	0	0	0	Gastric biopsy	Mexico; Australia: Perth; Taiwan: Taipei	Homo sapiens	Gastric ulcer								0.9714256248975685	
strain	Bacillus cereus E33L	726		288681	8384	726.11	1.00	626922	6652	510128	1.2290	Pathogen	0.8445	0.0002	726	0.0962		0.0334	391	10.811501781810945	1.849893381047532	1	8383	1.0	725.1095485691887	1	582	7797	1	3	0	0	0	0	1.00	171.20	542.81	0.03	0.10	0	0	0	0	1.00	174.34	550.63	0.03	0.10	0	0	0	0	1.00	571.64	7693.77	1.00	2.85	0	0	0	0	Animal; carcass of dead zebra	Namibia: Etosha National Park	Zebra	Unknown								0.8444515256619362	
strain	Streptococcus agalactiae ILRI005	508		1309807	3313	508.96	5.93	247933	1883	227669	1.0890	Pathogen	0.9536	0.0001	508	0.1079		0.0588	400	64.86901069086566	11.09936028628519	6	3307	6.0	502.9581714754599	6	3216	90	0	0	1	0	0	0	5.93	491.96	5.78	0	0	0.16	0	0	0	6.00	496.88	5.91	0	0	0.17	0	0	0	5.93	3185.08	88.68	0	0	0.97	0	0	0	human clinical samples	USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio	Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix	Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis								0.9536123449749127	
strain	Serratia marcescens WW4	420		435998	438	420.07	409.81	32777	254	32515	1.0081	Pathogen	0.9836	0.0001	420	0.0062		0.0196	431	4475.961737669731	765.8558597536783	414	24	414.0	6.073185237701366	414	4	11	0	8	1	0	0	0	409.81	1.98	3.10	0	0.83	0.11	0	0	0	414.00	2.00	3.12	0	0.84	0.11	0	0	0	409.81	3.96	10.93	0	7.93	1.00	0	0	0	Respiratory	USA:Virginia; South Korea; Mexico	Homo sapiens	Septicaemia; abscesses; burn infections; osteomyelitis								0.9836095874655515	
strain	Staphylococcus haemolyticus JCSC1435	351		279808	1109	351.63	80.95	82626	780	22643	3.6491	Pathogen	0.8398	0.0001	351	0.0084		0.0319	232	886.5431461084974	151.69125724589762	82	1027	82.0	269.6324890689247	82	0	982	31	11	3	0	0	0	80.95	0	260.94	3.41	0.59	0.18	0	0	0	82.00	0	265.42	3.42	0.61	0.18	0	0	0	80.95	0	965.91	30.92	10.55	2.96	0	0	0	Japanese inpatient at Juntendo Hospital; Tokyo;	Juntendo Hospital Tokyo	Homo sapiens	Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis								0.839769336683662	
strain	Bacillus thuringiensis HD-789	207		1217737	2598	207.19	1.00	194195	1959	163223	1.1898	Pathogen	0.7903	0.0001	207	0.0297		0.0092	113	10.811501781810945	1.849893381047532	1	2597	1.0	206.1903117421076	1	0	2593	1	3	0	0	0	0	1.00	0	202.99	0.03	0.15	0	0	0	0	1.00	0	206.00	0.03	0.15	0	0	0	0	1.00	0	2558.17	1.00	2.97	0	0	0	0	soil	China: Wuhan	Invertebrate	None								0.7902590134053659	
strain	Acinetobacter sp. ADP1	181		62977.1	2343	181.24	23.71	174756	1237	40417	4.3238		0.7799	0.0000	181	0.0112		0.0123	154	259.47604276346266	44.39744114514076	24	2319	24.0	157.2431451073866	24	0	2063	128	0	102	14	12	0	23.71	0	139.72	7.95	0	6.04	0.88	0.70	0	24.00	0	141.60	7.98	0	6.07	0.89	0.70	0	23.71	0	2035.08	127.47	0	101.55	13.84	11.95	0												0.7799459980029556	
strain	Bacillus thuringiensis MC28	150		1195464	1866	150.02	1.00	139353	1428	119746	1.1637	Pathogen	0.7811	0.0000	150	0.0221		0.0068	65	10.811501781810945	1.849893381047532	1	1865	1.0	149.01622063023933	1	0	1859	1	3	0	2	0	0	1.00	0	145.61	0.03	0.14	0	0.66	0	0	1.00	0	148.17	0.03	0.15	0	0.67	0	0	1.00	0	1832.19	1.00	2.84	0	1.97	0	0	soil	China: Wuhan	Invertebrate	None								0.781076745057698	
strain	Staphylococcus warneri SG1	112		1194526	602	112.22	1.99	44807	384	17648	2.5389	Pathogen	0.7982	0.0000	112	0.0071		0.0110	64	21.62300356362189	3.699786762095064	2	600	2.0	110.22098702944619	2	0	580	10	2	8	0	0	0	1.99	0	105.77	1.01	0.18	1.09	0	0	0	2.00	0	107.93	1.01	0.18	1.10	0	0	0	1.99	0	570.40	10.00	2.00	7.92	0	0	0			Bos taurus; Culex quinquefasciatus; gallus gallus; Homo sapiens; medicago truncatula; Musca domestica; Nicotiana glauca; Phaseolus vulgaris; prunus dulcis; Sus scrofa; Zea mays	infection								0.7982027823935166	
