Anova.clm               Anova Tables for Cumulative Link (Mixed) Models
CDA.cv                  Cross validation
CDA.test                Significance test for CDA
DIABLO.cv               Cross validation
DIABLO.test             Significance test based on cross-validation
G.bintest               G-test for binary variables
G.multcomp              Pairwise comparisons after a G-test
G.test                  G-test
G.theo.multcomp         Pairwise comparisons after a G-test for given
                        probabilities
GPA.test                Significance test for GPA
MVA.anova               Type II permutation test for constrained
                        multivariate analyses
MVA.biplot              Biplot of multivariate analyses
MVA.cmv                 Cross model validation
MVA.cor                 Correlations of multivariate analyses
MVA.corplot             Correlation circle of multivariate analyses
MVA.cv                  Cross validation
MVA.load                Loadings of multivariate analyses
MVA.loadplot            Loading plot of multivariate analyses
MVA.pairplot            Paired plot of multivariate analyses
MVA.plot                Plotting of multivariate analyses
MVA.scoreplot           Score plot of multivariate analyses
MVA.scores              Scores of multivariate analyses
MVA.synt                Synthesis quality of multivariate analyses
MVA.test                Significance test based on cross (model)
                        validation
MVA.trajplot            Trajectory plot of multivariate analyses
OR.multinom             Odds-ratio (multinomial regression)
PLSDA.VIP               Variable Importance in the Projection (VIP)
RVAideMemoire-package   Testing and Plotting Procedures for
                        Biostatistics
adonis.II               Type II permutation MANOVA using distance
                        matrices
back.emmeans            Back-transformation of EMMeans
back.lsmeans            Deprecated functions in RVAideMemoire package
bootstrap               Bootstrap
byf.hist                Histogram for factor levels
byf.mqqnorm             QQ-plot for factor levels
byf.mshapiro            Shapiro-Wilk test for factor levels
byf.qqnorm              QQ-plot for factor levels
byf.shapiro             Shapiro-Wilk test for factor levels
cdf.discrete            Cumulative Distribution Function of a known
                        discrete distribution
chisq.bin.exp           Expected counts for comparison of response
                        probabilities to given values
chisq.bintest           Pearson's Chi-squared test for binary variables
chisq.exp               Expected counts for comparison of proportions
                        to given values
chisq.multcomp          Pairwise comparisons after a chi-squared
                        goodness-of-fit test
chisq.theo.bintest      Pearson's Chi-squared test for comparison of
                        response probabilities to given values
chisq.theo.multcomp     Pairwise comparisons after a chi-squared test
                        for given probabilities
cochran.qtest           Cochran's Q test
cond.multinom           Condition number of the Hessian matrix of a
                        multinomial log-linear model
coord.proj              Coordinates of projected points
cor.2comp               Comparison of 2 Pearson's linear correlation
                        coefficients
cor.conf                Equality of a Pearson's linear correlation
                        coefficient to a given value
cor.multcomp            Comparison of several Pearson's linear
                        correlation coefficients
cov.test                Significance test for the covariance between
                        two datasets
cox.resid               Martingale residuals of a Cox model
cramer                  Cramer's association coefficient
cramer.test             Cramer's association coefficient
cv                      Coefficient of variation
dendro.gp               Dendrogram and number of groups to be chosen
dummy                   Dummy responses
elogis                  Empirical logistic transformation
fisher.bintest          Fisher's exact test for binary variables
fisher.multcomp         Pairwise comparisons using Fisher's exact test
fp.test                 Fligner-Policello test
ind.contrib             Individual contributions in regression
least.rect              Least rectangles linear regression
loc.slp                 Slope of a hand-defined line
logis.fit               Graphical adujstment of a simple binary
                        logistic regression to data
logis.noise             Creating a nls model for logistic regression
                        from fitted values of a glm model
mod                     Mode
mood.medtest            Mood's median test
mqqnorm                 Multivariate normality QQ-Plot
mshapiro.test           Shapiro-Wilk multivariate normality test
multinomial.multcomp    Pairwise comparisons after an exact multinomial
                        test
multinomial.test        Exact multinomial test
multinomial.theo.multcomp
                        Pairwise comparisons after an exact multinomial
                        test for given probabilities
multtest.cor            Univariate correlation test for multiple
                        variables
multtest.gp             Univariate comparison of groups for multiple
                        variables
multtest.gp.bin         Univariate comparison of groups for multiple
                        binary variables
ord.rw                  Re-computation of an ordination using given row
                        weights
overdisp.glmer          Estimation of overdispersion with 'glmer'
                        models
p.beta                  Rescaling of a [0,1] variable into the (0,1)
                        interval (and vice-versa)
pairwise.CDA.test       Pairwise comparisons for CDA
pairwise.G.test         Pairwise comparisons for proportions using
                        G-tests
pairwise.MVA.test       Pairwise permutation tests based on cross
                        (model) validation
pairwise.factorfit      Pairwise comparisons of groups displayed on a
                        factorial map
pairwise.mood.medtest   Pairwise Mood's median tests
pairwise.perm.manova    Pairwise permutation MANOVAs
pairwise.perm.t.test    Pairwise permutation t tests
pairwise.perm.var.test
                        Pairwise permutation F tests
pairwise.var.test       Pairwise F tests
pcor                    (Semi-)Partial correlation
pcor.test               Tests for (semi-)partial
                        association/correlation between paired samples
perm.anova              Permutation Analysis of Variance
perm.bartlett.test      Permutation Bartlett's test of homogeneity of
                        variances
perm.cor.test           Permutation Pearson's correlation test
perm.t.test             Permutation Student's t-test
perm.var.test           Permutation F test to compare two variances
plotresid               Simple analysis of model residuals
plotsurvivors           Survivor curve
predict.CDA.cv          Predict method for cross-validated CDA
                        submodels
predict.MVA.cv          Predict method for cross-validated submodels
predict.coadisc         Predict method for CDA
prop.bin.multcomp       Pairwise comparisons after a test for given
                        probabilities
prop.multcomp           Pairwise comparisons after a test for given
                        proportions
prop.multinom           Proportions and standard errors
prop.multinom.test      Wald tests for comparison of proportions
quasibinomial.QAIC      QAIC(c) calculation with GLMs of the quasi-
                        family
rating.emmeans          EMMeans for Cumulative Link (Mixed) Models
rating.prob             Observed rating frequencies
reg.ci                  Confidence intervals of a simple linear
                        regression
scat.cr                 "Correlation" of variables to axes in MCA or
                        mix analyses
se                      Standard error
seq2                    Sequence generation
spearman.ci             Confidence interval of a Spearman's rank
                        correlation coefficient
spearman.cor.multcomp   Comparison of several Spearman's rank
                        correlation coefficients
splitf                  Divide into groups respecting relative
                        proportions
stand                   Standardization of a data frame based on
                        another data frame
test.multinom           Significance tests of coefficients (multinomial
                        regression)
to.dudi                 Synthesis quality of multivariate analyses
user.cont               User defined contrasts for EMMeans
wald.ptheo.multinom.test
                        Wald tests for comparison of proportions to
                        theoretical values
wald.ptheo.test         Wald test for comparison of a proportion to a
                        theoretical value
wilcox.paired.multcomp
                        Non parametric pairwise comparisons for paired
                        data
wilcox.signtest         Wilcoxon sign test
wmean                   Weighted arithmetic mean
