* using log directory 'd:/Rcompile/CRANpkg/local/4.4/wrProteo.Rcheck'
* using R version 4.4.3 Patched (2026-02-12 r89426 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'wrProteo/DESCRIPTION' ... OK
* this is package 'wrProteo' version '2.0.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'wrProteo' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc       2.7Mb
    extdata   2.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [49s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [64s] ERROR
Error(s) in re-building vignettes:
--- re-building 'wrProteoVignette1.Rmd' using rmarkdown
--- finished re-building 'wrProteoVignette1.Rmd'

--- re-building 'wrProteoVignetteUPS1.Rmd' using rmarkdown

Quitting from wrProteoVignetteUPS1.Rmd:515-517 [testProline]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `combineMultFilterNAimput()`:
! testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
---
Backtrace:
    ▆
 1. └─wrProteo::testRobustToNAimputation(dataPL, imputMethod = "informed")
 2.   └─wrProteo::combineMultFilterNAimput(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wrProteoVignetteUPS1.Rmd' failed with diagnostics:
testRobustToNAimputation : combineMultFilterNAimput : Invalid entry for 'useComparison' in context of 'grp' : 'useComparison' must match 2 levels of 'grp'
--- failed re-building 'wrProteoVignetteUPS1.Rmd'

SUMMARY: processing the following file failed:
  'wrProteoVignetteUPS1.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [31s] OK
* checking HTML version of manual ... [16s] OK
* DONE
Status: 1 ERROR, 1 NOTE