# Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results

## Documentation for package ‘hidecan’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.check_cols | Checks whether some columns are present in a tibble
.compute_chrom_length_genes | Computes chromosomes' length for a tibble of genes
apply_threshold | Filters GWAS or DE results based on a threshold
apply_threshold.CAN_data | Filters GWAS or DE results based on a threshold
apply_threshold.default | Filters GWAS or DE results based on a threshold
apply_threshold.DE_data | Filters GWAS or DE results based on a threshold
apply_threshold.GWAS_data | Filters GWAS or DE results based on a threshold
CAN_data | Creates a 'CAN_data' object
combine_chrom_length | Computes chromosomes' length from list
compute_chrom_length | Computes chromosomes' length
compute_chrom_length.CAN_data | Computes chromosomes' length
compute_chrom_length.DE_data | Computes chromosomes' length
compute_chrom_length.GWAS_data | Computes chromosomes' length
create_hidecan_plot | Creates a HIDECAN plot
DE_data | Creates a 'DE_data' object
get_example_data | Example dataset
GWAS_data | Creates a 'GWAS_data' object
GWAS_data_from_gwaspoly | Extracts information from GWASpoly output
hidecan_plot | Wrapper to create a HIDECAN plot
hidecan_plot_from_gwaspoly | Creates a HIDECAN plot from GWASpoly output
new_CAN_data | 'CAN_data' constructor
new_DE_data | 'DE_data' constructor
new_GWAS_data | 'GWAS_data' constructor
run_hidecan_shiny | Launches the HIDECAN shiny app
validate_CAN_data | Checks validity of input for 'CAN_data' constructor
validate_DE_data | Checks validity of input for 'DE_data' constructor
validate_GWAS_data | Checks validity of input for 'GWAS_data' constructor