(((("Nanoarchaeum equitans Kin4-M",("Pyrobaculum aerophilum",("Aeropyrum pernix",("Sulfolobus tokodaii","Sulfolobus solfataricus")))),("Thermoplasma acidophilum","Thermoplasma volcanium")),(("Pyrococcus furiosus DSM 3638",("Pyrococcus abyssi","Pyrococcus horikoshii")),(("Methanopyrus kandleri AV19",("Methanothermobacter thermautotrophicus","Methanococcus jannaschii")),("Archaeoglobus fulgidus",("Halobacterium sp. NRC-1",("Methanosarcina acetivorans str. C2A","Methanosarcina mazei Goe1")))))),(("Aquifex aeolicus","Thermotoga maritima"),((((("Oceanobacillus iheyensis HTE831",("Bacillus halodurans",("Bacillus subtilis",("Bacillus cereus ATCC 14579","Bacillus anthracis str. Ames")))),((("Listeria monocytogenes EGD-e","Listeria innocua"),("Lactobacillus plantarum WCFS1",("Enterococcus faecalis V583",("Lactococcus lactis subsp. lactis",(("Streptococcus mutans UA159",(("Streptococcus pyogenes MGAS8232",("Streptococcus pyogenes",("Streptococcus pyogenes MGAS315","Streptococcus pyogenes SSI-1"))),("Streptococcus agalactiae NEM316","Streptococcus agalactiae 2603V/R"))),("Streptococcus pneumoniae R6","Streptococcus pneumoniae TIGR4")))))),("Staphylococcus epidermidis ATCC 12228",("Staphylococcus aureus subsp. aureus MW2",("Staphylococcus aureus subsp. aureus N315","Staphylococcus aureus subsp. aureus Mu50"))))),("Mycoplasma pulmonis",("Ureaplasma urealyticum",("Mycoplasma penetrans",("Mycoplasma gallisepticum R",("Mycoplasma pneumoniae","Mycoplasma genitalium")))))),("Fusobacterium nucleatum subsp. nucleatum ATCC 25586",("Thermoanaerobacter tengcongensis",("Clostridium perfringens",("Clostridium acetobutylicum","Clostridium tetani E88"))))),((("Leptospira interrogans serovar lai str. 56601",("Treponema pallidum","Borrelia burgdorferi")),("Chlorobium tepidum TLS",("Bacteroides thetaiotaomicron VPI-5482","Porphyromonas gingivalis W83"))),(("Gloeobacter violaceus",(("Thermosynechococcus elongatus BP-1",("Synechocystis sp. PCC 6803","Nostoc sp. PCC 7120")),(("Prochlorococcus marinus str. MIT 9313","Synechococcus sp. WH 8102"),("Prochlorococcus marinus subsp. pastoris str. CCMP1378","Prochlorococcus marinus subsp. marinus str. CCMP1375")))),((("Deinococcus radiodurans",(("Bifidobacterium longum NCC2705",((("Corynebacterium diphtheriae",("Corynebacterium efficiens YS-314","Corynebacterium glutamicum ATCC 13032")),("Mycobacterium leprae",("Mycobacterium bovis subsp. bovis AF2122/97",("Mycobacterium tuberculosis CDC1551","Mycobacterium tuberculosis H37Rv")))),("Streptomyces avermitilis MA-4680","Streptomyces coelicolor A3<2>"))),("Tropheryma whipplei str. Twist","Tropheryma whipplei TW08/27"))),("Pirellula sp.",(("Chlamydophila caviae GPIC",("Chlamydophila pneumoniae TW-183",("Chlamydophila pneumoniae CWL029",("Chlamydophila pneumoniae J138","Chlamydophila pneumoniae AR39")))),("Chlamydia trachomatis","Chlamydia muridarum")))),(("Campylobacter jejuni",("Wolinella succinogenes",("Helicobacter hepaticus ATCC 51449",("Helicobacter pylori J99","Helicobacter pylori 26695")))),((("Caulobacter crescentus CB15",("Bradyrhizobium japonicum",(("Sinorhizobium meliloti",("Agrobacterium tumefaciens","Agrobacterium tumefaciens str. C58 <U. Washington>")),("Mesorhizobium loti",("Brucella suis 1330","Brucella melitensis"))))),("Rickettsia conorii","Rickettsia prowazekii")),((("Nitrosomonas europaea ATCC 19718",("Ralstonia solanacearum",("Bordetella pertussis",("Bordetella bronchiseptica","Bordetella parapertussis")))),("Chromobacterium violaceum ATCC 12472",("Neisseria meningitidis MC58","Neisseria meningitidis Z2491"))),((("Xanthomonas axonopodis pv. citri str. 306","Xanthomonas campestris pv. campestris str. ATCC 33913"),("Xylella fastidiosa 9a5c","Xylella fastidiosa Temecula1")),("Coxiella burnetii RSA 493",(("Pseudomonas aeruginosa PA01",("Pseudomonas syringae pv. tomato str. DC3000","Pseudomonas putida KT2440")),("Shewanella oneidensis MR-1",((((("Photorhabdus luminescens subsp. laumondii TTO1",("Yersinia pestis","Yersinia pestis KIM")),(("Escherichia coli CFT073",(("Escherichia coli O157_H7","Escherichia coli O157_H7 EDL933"),("Escherichia coli K12",("Shigella flexneri 2a str. 2457T","Shigella flexneri 2a str. 301")))),("Salmonella typhimurium LT2",("Salmonella enterica subsp. enterica serovar Typhi Ty2","Salmonella enterica subsp. enterica serovar Typhi")))),(("Wigglesworthia brevipalpis","Candidatus Blochmannia floridanus"),("Buchnera aphidicola <Baizongia pistaciae>",("Buchnera sp. APS","Buchnera aphidicola str. Sg <Schizaphis graminum>")))),("Haemophilus ducreyi 35000HP",("Pasteurella multocida","Haemophilus influenzae Rd"))),(("Vibrio parahaemolyticus RIMD 2210633",("Vibrio vulnificus YJ016","Vibrio vulnificus CMCP6")),"Vibrio cholerae")))))))))))))));
((((("Bacteroides thetaiotaomicron VPI-5482","Porphyromonas gingivalis W83"),("Pirellula sp.",(("Chlamydophila pneumoniae TW-183",("Chlamydophila pneumoniae AR39",("Chlamydophila pneumoniae J138","Chlamydophila pneumoniae CWL029"))),("Chlamydia muridarum",("Chlamydia trachomatis","Chlamydophila caviae GPIC"))))),("Leptospira interrogans serovar lai str. 56601","Chlorobium tepidum TLS")),(("Treponema pallidum","Borrelia burgdorferi"),(("Aquifex aeolicus",("Nanoarchaeum equitans Kin4-M",(("Aeropyrum pernix",("Pyrobaculum aerophilum",("Sulfolobus solfataricus","Sulfolobus tokodaii"))),(("Pyrococcus furiosus DSM 3638",("Pyrococcus horikoshii","Pyrococcus abyssi")),(("Methanopyrus kandleri AV19","Methanothermobacter thermautotrophicus"),(("Methanococcus jannaschii",("Thermoplasma volcanium","Thermoplasma acidophilum")),("Archaeoglobus fulgidus",("Halobacterium sp. NRC-1",("Methanosarcina acetivorans str. C2A","Methanosarcina mazei Goe1"))))))))),("Mycoplasma pulmonis",(("Mycoplasma gallisepticum R",("Mycoplasma genitalium","Mycoplasma pneumoniae")),("Mycoplasma penetrans","Ureaplasma urealyticum")))))),((((((((((((((("Buchnera sp. APS",("Buchnera aphidicola str. Sg <Schizaphis graminum>",("Buchnera aphidicola <Baizongia pistaciae>",("Wigglesworthia brevipalpis","Candidatus Blochmannia floridanus")))),("Haemophilus ducreyi 35000HP",("Pasteurella multocida","Haemophilus influenzae Rd"))),("Yersinia pestis KIM","Yersinia pestis")),("Salmonella enterica subsp. enterica serovar Typhi Ty2",("Salmonella enterica subsp. enterica serovar Typhi","Salmonella typhimurium LT2"))),(("Shigella flexneri 2a str. 301","Escherichia coli O157_H7"),(("Escherichia coli K12","Shigella flexneri 2a str. 2457T"),("Escherichia coli O157_H7 EDL933","Escherichia coli CFT073")))),"Photorhabdus luminescens subsp. laumondii TTO1"),("Vibrio cholerae",("Vibrio parahaemolyticus RIMD 2210633",("Vibrio vulnificus YJ016","Vibrio vulnificus CMCP6")))),"Shewanella oneidensis MR-1"),("Pseudomonas aeruginosa PA01",("Pseudomonas syringae pv. tomato str. DC3000","Pseudomonas putida KT2440"))),((("Neisseria meningitidis MC58","Neisseria meningitidis Z2491"),(("Nitrosomonas europaea ATCC 19718",("Bordetella parapertussis",("Bordetella pertussis","Bordetella bronchiseptica"))),("Chromobacterium violaceum ATCC 12472","Ralstonia solanacearum"))),(("Xylella fastidiosa 9a5c","Xylella fastidiosa Temecula1"),("Xanthomonas axonopodis pv. citri str. 306","Xanthomonas campestris pv. campestris str. ATCC 33913")))),"Coxiella burnetii RSA 493"),("Rickettsia prowazekii","Rickettsia conorii")),(("Caulobacter crescentus CB15","Bradyrhizobium japonicum"),(("Mesorhizobium loti",("Sinorhizobium meliloti",("Agrobacterium tumefaciens","Agrobacterium tumefaciens str. C58 <U. Washington>"))),("Brucella suis 1330","Brucella melitensis")))),(("Helicobacter hepaticus ATCC 51449",("Helicobacter pylori 26695","Helicobacter pylori J99")),("Wolinella succinogenes","Campylobacter jejuni"))),(("Fusobacterium nucleatum subsp. nucleatum ATCC 25586","Thermotoga maritima"),(("Deinococcus radiodurans",("Gloeobacter violaceus",(("Synechocystis sp. PCC 6803","Nostoc sp. PCC 7120"),("Thermosynechococcus elongatus BP-1",("Prochlorococcus marinus subsp. pastoris str. CCMP1378",("Prochlorococcus marinus subsp. marinus str. CCMP1375",("Synechococcus sp. WH 8102","Prochlorococcus marinus str. MIT 9313"))))))),((("Tropheryma whipplei TW08/27","Tropheryma whipplei str. Twist"),(("Corynebacterium diphtheriae",("Corynebacterium efficiens YS-314","Corynebacterium glutamicum ATCC 13032")),("Bifidobacterium longum NCC2705",(("Mycobacterium leprae",("Mycobacterium tuberculosis H37Rv",("Mycobacterium bovis subsp. bovis AF2122/97","Mycobacterium tuberculosis CDC1551"))),("Streptomyces coelicolor A3<2>","Streptomyces avermitilis MA-4680"))))),(("Thermoanaerobacter tengcongensis",("Clostridium tetani E88",("Clostridium acetobutylicum","Clostridium perfringens"))),(("Bacillus cereus ATCC 14579","Bacillus anthracis str. Ames"),(("Streptococcus mutans UA159",(("Streptococcus pneumoniae R6","Streptococcus pneumoniae TIGR4"),("Lactococcus lactis subsp. lactis",(("Streptococcus pyogenes MGAS8232","Streptococcus pyogenes MGAS315"),(("Streptococcus pyogenes SSI-1","Streptococcus agalactiae 2603V/R"),("Streptococcus pyogenes","Streptococcus agalactiae NEM316")))))),("Lactobacillus plantarum WCFS1",("Enterococcus faecalis V583",(("Bacillus halodurans","Oceanobacillus iheyensis HTE831"),(("Listeria monocytogenes EGD-e","Listeria innocua"),("Bacillus subtilis",("Staphylococcus epidermidis ATCC 12228",("Staphylococcus aureus subsp. aureus MW2",("Staphylococcus aureus subsp. aureus N315","Staphylococcus aureus subsp. aureus Mu50"))))))))))))))));
