(((("Nanoarchaeum equitans Kin4-M",("Pyrobaculum aerophilum",("Aeropyrum pernix",("Sulfolobus tokodaii","Sulfolobus solfataricus")))),("Thermoplasma acidophilum","Thermoplasma volcanium")),(("Pyrococcus furiosus DSM 3638",("Pyrococcus abyssi","Pyrococcus horikoshii")),(("Methanopyrus kandleri AV19",("Methanothermobacter thermautotrophicus","Methanococcus jannaschii")),("Archaeoglobus fulgidus",("Halobacterium sp. NRC-1",("Methanosarcina acetivorans str. C2A","Methanosarcina mazei Goe1")))))),(("Aquifex aeolicus","Thermotoga maritima"),((((("Oceanobacillus iheyensis HTE831",("Bacillus halodurans",("Bacillus subtilis",("Bacillus cereus ATCC 14579","Bacillus anthracis str. Ames")))),((("Listeria monocytogenes EGD-e","Listeria innocua"),("Lactobacillus plantarum WCFS1",("Enterococcus faecalis V583",("Lactococcus lactis subsp. lactis",(("Streptococcus mutans UA159",(("Streptococcus pyogenes MGAS8232",("Streptococcus pyogenes",("Streptococcus pyogenes MGAS315","Streptococcus pyogenes SSI-1"))),("Streptococcus agalactiae NEM316","Streptococcus agalactiae 2603V/R"))),("Streptococcus pneumoniae R6","Streptococcus pneumoniae TIGR4")))))),("Staphylococcus epidermidis ATCC 12228",("Staphylococcus aureus subsp. aureus MW2",("Staphylococcus aureus subsp. aureus N315","Staphylococcus aureus subsp. aureus Mu50"))))),("Mycoplasma pulmonis",("Ureaplasma urealyticum",("Mycoplasma penetrans",("Mycoplasma gallisepticum R",("Mycoplasma pneumoniae","Mycoplasma genitalium")))))),("Fusobacterium nucleatum subsp. nucleatum ATCC 25586",("Thermoanaerobacter tengcongensis",("Clostridium perfringens",("Clostridium acetobutylicum","Clostridium tetani E88"))))),((("Leptospira interrogans serovar lai str. 56601",("Treponema pallidum","Borrelia burgdorferi")),("Chlorobium tepidum TLS",("Bacteroides thetaiotaomicron VPI-5482","Porphyromonas gingivalis W83"))),(("Gloeobacter violaceus",(("Thermosynechococcus elongatus BP-1",("Synechocystis sp. PCC 6803","Nostoc sp. PCC 7120")),(("Prochlorococcus marinus str. MIT 9313","Synechococcus sp. WH 8102"),("Prochlorococcus marinus subsp. pastoris str. CCMP1378","Prochlorococcus marinus subsp. marinus str. CCMP1375")))),((("Deinococcus radiodurans",(("Bifidobacterium longum NCC2705",((("Corynebacterium diphtheriae",("Corynebacterium efficiens YS-314","Corynebacterium glutamicum ATCC 13032")),("Mycobacterium leprae",("Mycobacterium bovis subsp. bovis AF2122/97",("Mycobacterium tuberculosis CDC1551","Mycobacterium tuberculosis H37Rv")))),("Streptomyces avermitilis MA-4680","Streptomyces coelicolor A3<2>"))),("Tropheryma whipplei str. Twist","Tropheryma whipplei TW08/27"))),("Pirellula sp.",(("Chlamydophila caviae GPIC",("Chlamydophila pneumoniae TW-183",("Chlamydophila pneumoniae CWL029",("Chlamydophila pneumoniae J138","Chlamydophila pneumoniae AR39")))),("Chlamydia trachomatis","Chlamydia muridarum")))),(("Campylobacter jejuni",("Wolinella succinogenes",("Helicobacter hepaticus ATCC 51449",("Helicobacter pylori J99","Helicobacter pylori 26695")))),((("Caulobacter crescentus CB15",("Bradyrhizobium japonicum",(("Sinorhizobium meliloti",("Agrobacterium tumefaciens","Agrobacterium tumefaciens str. C58 <U. Washington>")),("Mesorhizobium loti",("Brucella suis 1330","Brucella melitensis"))))),("Rickettsia conorii","Rickettsia prowazekii")),((("Nitrosomonas europaea ATCC 19718",("Ralstonia solanacearum",("Bordetella pertussis",("Bordetella bronchiseptica","Bordetella parapertussis")))),("Chromobacterium violaceum ATCC 12472",("Neisseria meningitidis MC58","Neisseria meningitidis Z2491"))),((("Xanthomonas axonopodis pv. citri str. 306","Xanthomonas campestris pv. campestris str. ATCC 33913"),("Xylella fastidiosa 9a5c","Xylella fastidiosa Temecula1")),("Coxiella burnetii RSA 493",(("Pseudomonas aeruginosa PA01",("Pseudomonas syringae pv. tomato str. DC3000","Pseudomonas putida KT2440")),("Shewanella oneidensis MR-1",((((("Photorhabdus luminescens subsp. laumondii TTO1",("Yersinia pestis","Yersinia pestis KIM")),(("Escherichia coli CFT073",(("Escherichia coli O157_H7","Escherichia coli O157_H7 EDL933"),("Escherichia coli K12",("Shigella flexneri 2a str. 2457T","Shigella flexneri 2a str. 301")))),("Salmonella typhimurium LT2",("Salmonella enterica subsp. enterica serovar Typhi Ty2","Salmonella enterica subsp. enterica serovar Typhi")))),(("Wigglesworthia brevipalpis","Candidatus Blochmannia floridanus"),("Buchnera aphidicola <Baizongia pistaciae>",("Buchnera sp. APS","Buchnera aphidicola str. Sg <Schizaphis graminum>")))),("Haemophilus ducreyi 35000HP",("Pasteurella multocida","Haemophilus influenzae Rd"))),(("Vibrio parahaemolyticus RIMD 2210633",("Vibrio vulnificus YJ016","Vibrio vulnificus CMCP6")),"Vibrio cholerae")))))))))))))));
("Borrelia burgdorferi",((((((((((((("Xylella fastidiosa Temecula1","Xylella fastidiosa 9a5c"),("Xanthomonas campestris pv. campestris str. ATCC 33913","Xanthomonas axonopodis pv. citri str. 306")),"Coxiella burnetii RSA 493"),("Wigglesworthia brevipalpis",(("Pseudomonas aeruginosa PA01",("Pseudomonas syringae pv. tomato str. DC3000","Pseudomonas putida KT2440")),("Shewanella oneidensis MR-1",(("Haemophilus ducreyi 35000HP",("Pasteurella multocida","Haemophilus influenzae Rd")),((("Vibrio parahaemolyticus RIMD 2210633",("Vibrio cholerae",("Vibrio vulnificus YJ016","Vibrio vulnificus CMCP6"))),(("Shigella flexneri 2a str. 301",("Escherichia coli K12",(("Escherichia coli CFT073","Shigella flexneri 2a str. 2457T"),("Escherichia coli O157_H7 EDL933","Escherichia coli O157_H7")))),("Salmonella typhimurium LT2",("Salmonella enterica subsp. enterica serovar Typhi","Salmonella enterica subsp. enterica serovar Typhi Ty2")))),(("Photorhabdus luminescens subsp. laumondii TTO1",("Yersinia pestis KIM","Yersinia pestis")),("Candidatus Blochmannia floridanus",("Buchnera aphidicola <Baizongia pistaciae>",("Buchnera aphidicola str. Sg <Schizaphis graminum>","Buchnera sp. APS")))))))))),("Chromobacterium violaceum ATCC 12472",("Neisseria meningitidis MC58","Neisseria meningitidis Z2491"))),"Nitrosomonas europaea ATCC 19718"),("Ralstonia solanacearum",("Bordetella parapertussis",("Bordetella bronchiseptica","Bordetella pertussis")))),(("Mesorhizobium loti",("Sinorhizobium meliloti",("Agrobacterium tumefaciens str. C58 <U. Washington>","Agrobacterium tumefaciens"))),("Bradyrhizobium japonicum",("Caulobacter crescentus CB15",("Brucella suis 1330","Brucella melitensis"))))),("Rickettsia prowazekii","Rickettsia conorii")),"Chlorobium tepidum TLS"),"Treponema pallidum"),"Aquifex aeolicus"),(("Campylobacter jejuni",("Wolinella succinogenes",("Helicobacter hepaticus ATCC 51449",("Helicobacter pylori 26695","Helicobacter pylori J99")))),((("Thermoanaerobacter tengcongensis",((("Tropheryma whipplei TW08/27","Tropheryma whipplei str. Twist"),(("Streptomyces coelicolor A3<2>","Streptomyces avermitilis MA-4680"),("Bifidobacterium longum NCC2705",(("Corynebacterium efficiens YS-314",("Corynebacterium diphtheriae","Corynebacterium glutamicum ATCC 13032")),("Mycobacterium leprae",("Mycobacterium tuberculosis H37Rv",("Mycobacterium bovis subsp. bovis AF2122/97","Mycobacterium tuberculosis CDC1551"))))))),("Deinococcus radiodurans",(("Gloeobacter violaceus",("Prochlorococcus marinus subsp. pastoris str. CCMP1378",("Prochlorococcus marinus subsp. marinus str. CCMP1375",("Synechococcus sp. WH 8102","Prochlorococcus marinus str. MIT 9313")))),("Thermosynechococcus elongatus BP-1",("Synechocystis sp. PCC 6803","Nostoc sp. PCC 7120")))))),(("Leptospira interrogans serovar lai str. 56601",("Bacteroides thetaiotaomicron VPI-5482","Porphyromonas gingivalis W83")),(("Clostridium perfringens",("Clostridium acetobutylicum","Clostridium tetani E88")),("Fusobacterium nucleatum subsp. nucleatum ATCC 25586",((("Bacillus subtilis",("Bacillus anthracis str. Ames","Bacillus cereus ATCC 14579")),(("Listeria monocytogenes EGD-e","Listeria innocua"),("Enterococcus faecalis V583",("Lactobacillus plantarum WCFS1",(("Streptococcus pneumoniae R6","Streptococcus pneumoniae TIGR4"),(("Streptococcus pyogenes SSI-1",("Streptococcus pyogenes MGAS315",("Streptococcus pyogenes","Streptococcus pyogenes MGAS8232"))),(("Streptococcus agalactiae NEM316","Streptococcus agalactiae 2603V/R"),("Lactococcus lactis subsp. lactis","Streptococcus mutans UA159")))))))),(("Staphylococcus epidermidis ATCC 12228",("Staphylococcus aureus subsp. aureus Mu50",("Staphylococcus aureus subsp. aureus N315","Staphylococcus aureus subsp. aureus MW2"))),("Oceanobacillus iheyensis HTE831","Bacillus halodurans"))))))),((("Mycoplasma genitalium","Mycoplasma pneumoniae"),("Mycoplasma gallisepticum R",("Mycoplasma penetrans",("Mycoplasma pulmonis","Ureaplasma urealyticum")))),("Thermotoga maritima",((("Pyrococcus horikoshii",("Pyrococcus furiosus DSM 3638","Pyrococcus abyssi")),("Methanococcus jannaschii",("Methanothermobacter thermautotrophicus",("Methanopyrus kandleri AV19",("Nanoarchaeum equitans Kin4-M",((("Halobacterium sp. NRC-1",("Methanosarcina mazei Goe1","Methanosarcina acetivorans str. C2A")),("Archaeoglobus fulgidus",("Thermoplasma acidophilum","Thermoplasma volcanium"))),("Pyrobaculum aerophilum",("Aeropyrum pernix",("Sulfolobus solfataricus","Sulfolobus tokodaii"))))))))),("Pirellula sp.",(("Chlamydophila caviae GPIC",("Chlamydia trachomatis","Chlamydia muridarum")),(("Chlamydophila pneumoniae J138","Chlamydophila pneumoniae CWL029"),("Chlamydophila pneumoniae TW-183","Chlamydophila pneumoniae AR39")))))))))));
