% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{valencia13k_dcst_depth2_merged}
\alias{valencia13k_dcst_depth2_merged}
\title{Valencia 13k merged depth-2 dCST assignments}
\format{
A list with five components:
\describe{
\item{assignments}{Data frame with one row per source sample and columns
\code{sample_id} (anonymized bundled-data identifier), \code{source_row}
(row number in the filtered Valencia 13k source), \code{Val_CST},
\code{Val_subCST}, \code{dcst_depth1}, and \code{dcst_depth2}.}
\item{summaries}{Named list of per-depth summary tables. Each table
contains \code{depth}, \code{dcst_label}, \code{n}, \code{prop}, and
\code{path_length}.}
\item{feature_labels}{Character vector of source taxon labels.}
\item{params}{List recording the construction parameters.}
\item{source}{Character string documenting provenance.}
}
}
\source{
Generated from the VALENCIA training data at
\url{https://github.com/ravel-lab/VALENCIA}. See
\code{data-raw/build_valencia13k_merged_dcst_depths.R} and the installed
\code{DATA_PROVENANCE.md} file.
}
\usage{
valencia13k_dcst_depth2_merged
}
\description{
A lightweight bundled assignment asset containing merged depth-2
Dominant community state type (dCST) labels for the full Valencia
13k vaginal microbiome training set.
}
\details{
The asset is computed from the Valencia 13k compositional matrix after
L-infinity normalization. dCSTs use \code{n0 = 50} and the merged
\code{low.freq.policy = "absorb"} view, so samples from low-support
provisional states are reassigned to retained states rather than stored as
explicit rare buckets.
}
\examples{
data(valencia13k_dcst_depth2_merged)
nrow(valencia13k_dcst_depth2_merged$assignments)
head(valencia13k_dcst_depth2_merged$summaries$depth2)

}
\keyword{datasets}
