ef0da53dcbafb30502cc24ea8d6db172 *DESCRIPTION
f4a5b30564bc064495dc4e2aee212d7e *NAMESPACE
1af3f167cbc5920734f15e5a21c7f023 *NEWS.md
aea5ac4fe40349fe881e23ea5d74fa3c *R/SCdeconR-package.R
8b90c384ef9b27191ec741c7eb4f2445 *R/deconvolution.R
53182225ec4f76811f1aac1f5ad769eb *R/differential_expression.R
763b6e5d1bd61cc1a25792b0d6070fc7 *R/globals.R
7a012d5253eb994045a767275a4d7b52 *R/helpers.R
cff6d4477ff43cac00e11e47f7777bad *R/pathway_analysis.R
e0b71778cc2a0ebb53b50ea10b1f7b1d *R/reference_construction.R
7471a0a0e94432f5183050d63f0e1527 *R/simulate_bulk.R
dc5c773404bf84a85bead99bb0e19ff4 *README.md
b3ad58cfeb1cd457a92c0966286d81c8 *inst/extdata/gsea/gmtfile/kegg.gmt
e0f4916a5b3c7ece87fdec0ccc411ae7 *inst/extdata/gsea/results/ct_adjust/GLYCOSPHINGOLIPID_BIOSYNTHESIS.tsv
d72d18aa0716f970eb7c52f6e8663f82 *inst/extdata/gsea/results/ct_adjust/P53_SIGNALING_PATHWAY.tsv
34ae83c40c738d780665922f37f1ec02 *inst/extdata/gsea/results/ct_adjust/SYSTEMIC_LUPUS_ERYTHEMATOSUS.tsv
da0a54ded4ae288e71a8eeb9a8d113bd *inst/extdata/gsea/results/ct_adjust/age_adjust.GseaPreranked.1680642129036.rpt
4e923c03c2e753ff0e2a44a988e2e5df *inst/extdata/gsea/results/ct_adjust/edb/deres.rnk
c6a7bd5b1f25a03280fa8a8b85cbaff2 *inst/extdata/gsea/results/ct_adjust/edb/gene_sets.gmt
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9e011c39ecfaf31a99ac6f1456aef27f *inst/extdata/gsea/results/ct_adjust/gsea_report_for_na_pos_1680642129036.tsv
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5aa543c8a4a395f3d152e2b4aa45242e *inst/extdata/gsea/results/ct_unadjust/ALLOGRAFT_REJECTION.tsv
c93170133eb9cb826f95e26589beed4c *inst/extdata/gsea/results/ct_unadjust/PPAR_SIGNALING_PATHWAY.tsv
fe97007958ee0b241c7f41c41967072c *inst/extdata/gsea/results/ct_unadjust/age_unadjust.GseaPreranked.1680642330325.rpt
99825ab72dc65de9b1469fd87045a586 *inst/extdata/gsea/results/ct_unadjust/edb/deres_notadjust.rnk
977349f64488d2a04dc8661fbba4d2ed *inst/extdata/gsea/results/ct_unadjust/edb/gene_sets.gmt
034d56df05e7429262a18d5ce9044812 *inst/extdata/gsea/results/ct_unadjust/gene_set_sizes.tsv
cb505aac96fd5e29bbdb05ab9739b161 *inst/extdata/gsea/results/ct_unadjust/gsea_report_for_na_neg_1680642330325.tsv
720d1fb5fc44dd97e77ebeafb52184df *inst/extdata/gsea/results/ct_unadjust/gsea_report_for_na_pos_1680642330325.tsv
8ee5415b1bd89e0fab58edf4297fc09e *inst/extdata/gsea/results/ct_unadjust/xtools.css
bccd2361fadaf566a1015c4051cc55ef *inst/extdata/gsea/rnkfiles/deres.rnk
34731497763d15975624955cd1432606 *inst/extdata/gsea/rnkfiles/deres_notadjust.rnk
2397d88e5d3008c832de3990e9d5d2b2 *inst/extdata/refdata/phenodata_sample1.txt
26e9454c233744c85cb1a67c20ceedb0 *inst/extdata/refdata/phenodata_sample2.txt
2a0c81d8a947342cf8f0b8bc7e0ab2de *inst/extdata/refdata/sample1/barcodes.tsv.gz
7629544567ec8dca95713d415eaf94b8 *inst/extdata/refdata/sample1/features.tsv.gz
93b0cfeffd17c3c5fa53049072468e31 *inst/extdata/refdata/sample1/matrix.mtx.gz
ee13477348a203ff360e27f5ffcf1413 *inst/extdata/refdata/sample2/barcodes.tsv.gz
7629544567ec8dca95713d415eaf94b8 *inst/extdata/refdata/sample2/features.tsv.gz
eca7714de40ca55d17d49d384b3b9bf9 *inst/extdata/refdata/sample2/matrix.mtx.gz
9efd7996eac75c7828d86b8340f27d31 *inst/script/ddls.R
1eb1706f4ff1da46ce160bbb44870b62 *inst/script/tape_deconvolution.py
698d512261e55615fe48f7f4eee1c09b *man/SCdeconR-package.Rd
6ab6bf9e76458580b955fc5584890aee *man/bulk_generator.Rd
55dc26fc611c941e478cf6a5f7b54df2 *man/celltype_expression.Rd
3325d372d00cffca680e6d4078c989c2 *man/comparedeg_scatter.Rd
84540387ad64fd647e5178313f5973a9 *man/comparegsea_scatter.Rd
897c53149a93473f34c8039a323e0dc5 *man/compute_metrics.Rd
dd42dac06b1b2b937333611adf1a448e *man/construct_ref.Rd
226c1ec920e13d80c87a8cbbff0f4fb6 *man/figures/SCdeconR.png
ee15d6c90ae4fd8fa72b0f1ddf386c89 *man/gsea_heatmap.Rd
173d922df7de1a47219f834041d798c0 *man/gsea_rwplot.Rd
31adef4e47ee62167dcdf55c2d1277a5 *man/gsea_sumplot.Rd
84ff3772b2a75a4e0465b4f659f9abf7 *man/load_scdata.Rd
e1274f075c0b0713df56dd2584eaf6e0 *man/prepare_rnk.Rd
2364fd779eb53432e73a273efc2337aa *man/prop_barplot.Rd
6402e5795e98ac3e75a51f385ed46890 *man/reformat_gmt.Rd
21a1f08e1c2be35c73541ddb91588dad *man/run_de.Rd
c86b3af557c4226fcf5c2a4a21821a77 *man/scaling.Rd
0a370fa8a2c821b32b57e80d2611c3d3 *man/scdecon.Rd
e9157afa87e85acfa61cca38b0163c8b *man/transformation.Rd
