Last updated on 2026-05-03 20:51:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.1 | 9.16 | 361.54 | 370.70 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.1 | 5.85 | 232.79 | 238.64 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.1 | 17.00 | 544.29 | 561.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.1 | 14.00 | 541.81 | 555.81 | OK | |
| r-devel-windows-x86_64 | 0.7.1 | 16.00 | 213.00 | 229.00 | ERROR | |
| r-patched-linux-x86_64 | 0.7.1 | 8.64 | 335.03 | 343.67 | OK | |
| r-release-linux-x86_64 | 0.7.1 | 8.62 | 338.63 | 347.25 | OK | |
| r-release-macos-arm64 | 0.7.1 | 2.00 | 46.00 | 48.00 | OK | |
| r-release-macos-x86_64 | 0.7.1 | 6.00 | 277.00 | 283.00 | OK | |
| r-release-windows-x86_64 | 0.7.1 | 13.00 | 220.00 | 233.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.1 | 2.00 | 47.00 | 49.00 | OK | |
| r-oldrel-macos-x86_64 | 0.7.1 | 6.00 | 283.00 | 289.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.1 | 19.00 | 310.00 | 329.00 | OK |
Version: 0.7.1
Check: examples
Result: ERROR
Running examples in ‘cards-Ex.R’ failed
The error most likely occurred in:
> ### Name: ard_hierarchical
> ### Title: Hierarchical ARD Statistics
> ### Aliases: ard_hierarchical ard_hierarchical_count
> ### ard_hierarchical.data.frame ard_hierarchical_count.data.frame
>
> ### ** Examples
>
> ard_hierarchical(
+ data = ADAE |>
+ dplyr::slice_tail(n = 1L, by = c(USUBJID, TRTA, AESOC, AEDECOD)),
+ variables = c(AESOC, AEDECOD),
+ by = TRTA,
+ id = USUBJID,
+ denominator = ADSL
+ )
Error in as.data.frame.integer(x[[i]], optional = TRUE) :
row names contain missing values
Calls: ard_hierarchical ... data.frame -> as.data.frame -> as.data.frame.integer
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64
Version: 0.7.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [7m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cards)
>
> test_check("cards")
Starting 2 test processes.
Saving _problems/test-ard_hierarchical-45.R
Saving _problems/test-ard_hierarchical-67.R
Saving _problems/test-ard_hierarchical-278.R
Saving _problems/test-ard_stack_hierarchical-73.R
Saving _problems/test-ard_stack_hierarchical-111.R
Saving _problems/test-ard_stack_hierarchical-182.R
Saving _problems/test-ard_stack_hierarchical-249.R
Saving _problems/test-ard_stack_hierarchical-263.R
Saving _problems/test-ard_stack_hierarchical-734.R
Saving _problems/test-ard_tabulate-151.R
Saving _problems/test-ard_tabulate-162.R
Saving _problems/test-ard_tabulate-471.R
Saving _problems/test-ard_tabulate-640.R
Saving _problems/test-ard_tabulate-769.R
Saving _problems/test-ard_tabulate-1315.R
> test-bind_ard.R: i 27 rows with duplicated statistic values have been removed.
> test-bind_ard.R: * See cards::bind_ard(.distinct) (`?cards::bind_ard()`) for detail
> test-bind_ard.R: s.
Saving _problems/test-shuffle_ard-366.R
Saving _problems/test-shuffle_ard-375.R
Saving _problems/test-shuffle_ard-633.R
[ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ]
══ Skipped tests (109) ═════════════════════════════════════════════════════════
• On CRAN (106): 'test-apply_fmt_fun.R:86:1', 'test-apply_fmt_fun.R:122:1',
'test-add_calculated_row.R:1:1', 'test-add_calculated_row.R:24:1',
'test-add_calculated_row.R:32:1', 'test-ard_formals.R:1:1',
'test-ard_attributes.R:3:1', 'test-ard_attributes.R:28:1',
'test-ard_identity.R:28:1', 'test-ard_missing.R:1:1',
'test-ard_missing.R:29:1', 'test-ard_mvsummary.R:85:1',
'test-ard_mvsummary.R:128:1', 'test-ard_pairwise.R:52:1',
'test-ard_pairwise.R:89:1', 'test-ard_pairwise.R:96:1',
'test-ard_hierarchical.R:2:1', 'test-ard_hierarchical.R:107:1',
'test-ard_hierarchical.R:117:1', 'test-ard_hierarchical.R:143:1',
'test-ard_hierarchical.R:253:1', 'test-ard_hierarchical.R:305:1',
'test-ard_hierarchical.R:328:1', 'test-ard_stack_hierarchical.R:76:1',
'test-ard_stack_hierarchical.R:335:1', 'test-ard_stack_hierarchical.R:349:1',
'test-ard_stack_hierarchical.R:497:1', 'test-ard_stack_hierarchical.R:575:1',
'test-ard_stack_hierarchical.R:586:1', 'test-ard_stack_hierarchical.R:599:1',
'test-ard_stack_hierarchical.R:667:1', 'test-ard_stack.R:221:1',
'test-ard_stack.R:239:1', 'test-ard_stack.R:267:1', 'test-ard_strata.R:1:1',
'test-ard_tabulate.R:1:1', 'test-ard_tabulate.R:67:1',
'test-ard_tabulate.R:101:1', 'test-ard_tabulate.R:245:1',
'test-ard_tabulate.R:563:1', 'test-ard_tabulate.R:699:1',
'test-ard_tabulate.R:772:1', 'test-ard_tabulate.R:1081:1',
'test-ard_tabulate.R:1130:1', 'test-ard_tabulate.R:1371:1',
'test-ard_tabulate_value.R:49:1', 'test-ard_tabulate_value.R:102:1',
'test-ard_total_n.R:1:1', 'test-as_card.R:1:1', 'test-as_card.R:21:1',
'test-as_nested_list.R:1:1', 'test-bind_ard.R:11:1', 'test-bind_ard.R:25:1',
'test-bind_ard.R:58:1', 'test-check_ard_structure.R:1:1',
'test-eval_capture_conditions.R:1:1', 'test-eval_capture_conditions.R:37:1',
'test-eval_capture_conditions.R:63:1', 'test-filter_ard_hierarchical.R:1:1',
'test-get_ard_statistics.R:1:1', 'test-mock.R:1:1', 'test-mock.R:12:1',
'test-mock.R:24:1', 'test-mock.R:34:1', 'test-mock.R:45:1',
'test-mock.R:56:1', 'test-mock.R:67:1', 'test-mock.R:77:1',
'test-mock.R:88:1', 'test-mock.R:97:1', 'test-mock.R:105:1',
'test-options.R:29:1', 'test-print.R:1:1', 'test-print_ard_conditions.R:1:1',
'test-print_ard_conditions.R:69:1', 'test-print_ard_conditions.R:99:1',
'test-print_ard_conditions.R:110:1', 'test-print_ard_conditions.R:137:1',
'test-process_selectors.R:51:1', 'test-process_selectors.R:63:1',
'test-rename_ard_columns.R:32:1', 'test-rename_ard_groups.R:1:1',
'test-rename_ard_groups.R:18:1', 'test-rename_ard_groups.R:27:1',
'test-round5.R:1:1', 'test-shuffle_ard.R:3:1', 'test-shuffle_ard.R:118:1',
'test-shuffle_ard.R:129:1', 'test-shuffle_ard.R:269:1',
'test-shuffle_ard.R:402:1', 'test-shuffle_ard.R:488:1',
'test-sort_ard_hierarchical.R:1:1', 'test-tidy_ard_row_order.R:1:1',
'test-tidy_as_ard.R:1:1', 'test-update_ard.R:1:1', 'test-update_ard.R:19:1',
'test-update_ard.R:28:1', 'test-update_ard.R:56:1', 'test-update_ard.R:64:1',
'test-ard_summary.R:1:1', 'test-ard_summary.R:34:1',
'test-ard_summary.R:84:1', 'test-ard_summary.R:104:1',
'test-ard_summary.R:228:1', 'test-ard_summary.R:249:1',
'test-ard_summary.R:419:1'
• Required package 'hms' is not installed (1): 'test-ard_tabulate.R:1111:3'
• package_version(paste(R.version$major, R.version$minor, sep = ".")) <=
package_version("4.5.0") is not TRUE (2): 'test-ard_strata.R:73:3',
'test-ard_tabulate_value.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ard_hierarchical.R:36:3'): ard_hierarchical() works with by variable ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ard_hierarchical.R:36:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─cards::ard_hierarchical(...)
8. └─cards:::ard_hierarchical.data.frame(...)
9. ├─cards::ard_tabulate(...)
10. └─cards:::ard_tabulate.data.frame(...)
11. └─cards:::.calculate_tabulation_statistics(...)
12. └─cards:::.process_denominator(...)
13. ├─rlang::rep_named(...)
14. │ └─rlang::set_names(rep_len(x, length(names)), names)
15. ├─tidyr::drop_na(...)
16. └─cards:::.table_as_df(...)
17. ├─dplyr::as_tibble(...)
18. └─tibble:::as_tibble.table(...)
19. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
20. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
21. ├─base::eval(ex)
22. │ └─base::eval(ex)
23. └─base::data.frame(...)
24. ├─base::as.data.frame(x[[i]], optional = TRUE)
25. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_hierarchical.R:47:3'): ard_hierarchical() works with by variable ──
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'ard_heir_with_by' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:47:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─cards::get_ard_statistics(...)
5. │ └─dplyr::filter(x, ...)
6. └─dplyr::filter(...)
── Error ('test-ard_hierarchical.R:265:3'): ard_hierarchical() and ard_hierarchical_count() with grouped data works ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:265:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─cards::ard_hierarchical(...)
5. └─cards:::ard_hierarchical.data.frame(...)
6. ├─cards::ard_tabulate(...)
7. └─cards:::ard_tabulate.data.frame(...)
8. └─cards:::.calculate_tabulation_statistics(...)
9. └─cards:::.process_denominator(...)
10. ├─rlang::rep_named(...)
11. │ └─rlang::set_names(rep_len(x, length(names)), names)
12. ├─tidyr::drop_na(...)
13. └─cards:::.table_as_df(...)
14. ├─dplyr::as_tibble(...)
15. └─tibble:::as_tibble.table(...)
16. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
17. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
18. ├─base::eval(ex)
19. │ └─base::eval(ex)
20. └─base::data.frame(...)
21. ├─base::as.data.frame(x[[i]], optional = TRUE)
22. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:64:3'): ard_stack_hierarchical(variables) messaging removed obs ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. └─cards::ard_stack_hierarchical(...)
2. └─cards:::internal_stack_hierarchical(...)
3. ├─base::append(...)
4. └─cards:::.run_hierarchical_fun(...)
5. ├─cards::ard_hierarchical(...)
6. └─cards:::ard_hierarchical.data.frame(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:102:3'): ard_stack_hierarchical(by) ───
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:102:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─cards::ard_stack_hierarchical(...)
10. └─cards:::internal_stack_hierarchical(...)
11. ├─base::append(...)
12. └─cards:::.run_hierarchical_fun(...)
13. ├─cards::ard_hierarchical(...)
14. └─cards:::ard_hierarchical.data.frame(...)
15. ├─cards::ard_tabulate(...)
16. └─cards:::ard_tabulate.data.frame(...)
17. └─cards:::.calculate_tabulation_statistics(...)
18. └─cards:::.process_denominator(...)
19. ├─rlang::rep_named(...)
20. │ └─rlang::set_names(rep_len(x, length(names)), names)
21. ├─tidyr::drop_na(...)
22. └─cards:::.table_as_df(...)
23. ├─dplyr::as_tibble(...)
24. └─tibble:::as_tibble.table(...)
25. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
27. ├─base::eval(ex)
28. │ └─base::eval(ex)
29. └─base::data.frame(...)
30. ├─base::as.data.frame(x[[i]], optional = TRUE)
31. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:173:3'): ard_stack_hierarchical(by) messaging ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. └─cards::ard_stack_hierarchical(...)
2. └─cards:::internal_stack_hierarchical(...)
3. ├─base::append(...)
4. └─cards:::.run_hierarchical_fun(...)
5. ├─cards::ard_hierarchical(...)
6. └─cards:::ard_hierarchical.data.frame(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:232:3'): ard_stack_hierarchical(denominator) messaging ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_stack_hierarchical.R:232:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─cards::ard_stack_hierarchical(...)
5. └─cards:::internal_stack_hierarchical(...)
6. ├─base::append(...)
7. └─cards:::.run_hierarchical_fun(...)
8. ├─cards::ard_hierarchical(...)
9. └─cards:::ard_hierarchical.data.frame(...)
10. ├─cards::ard_tabulate(...)
11. └─cards:::ard_tabulate.data.frame(...)
12. └─cards:::.calculate_tabulation_statistics(...)
13. └─cards:::.process_denominator(...)
14. ├─rlang::rep_named(...)
15. │ └─rlang::set_names(rep_len(x, length(names)), names)
16. ├─tidyr::drop_na(...)
17. └─cards:::.table_as_df(...)
18. ├─dplyr::as_tibble(...)
19. └─tibble:::as_tibble.table(...)
20. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
21. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
22. ├─base::eval(ex)
23. │ └─base::eval(ex)
24. └─base::data.frame(...)
25. ├─base::as.data.frame(x[[i]], optional = TRUE)
26. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:254:3'): ard_stack_hierarchical(by) with columns not in `denominator` ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-ard_stack_hierarchical.R:254:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─cards::ard_stack_hierarchical(...)
8. └─cards:::internal_stack_hierarchical(...)
9. ├─base::append(...)
10. └─cards:::.run_hierarchical_fun(...)
11. ├─cards::ard_hierarchical(...)
12. └─cards:::ard_hierarchical.data.frame(...)
13. ├─cards::ard_tabulate(...)
14. └─cards:::ard_tabulate.data.frame(...)
15. └─cards:::.calculate_tabulation_statistics(...)
16. └─cards:::.process_denominator(...)
17. ├─rlang::rep_named(...)
18. │ └─rlang::set_names(rep_len(x, length(names)), names)
19. ├─tidyr::drop_na(...)
20. └─cards:::.table_as_df(...)
21. ├─dplyr::as_tibble(...)
22. └─tibble:::as_tibble.table(...)
23. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
24. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
25. ├─base::eval(ex)
26. │ └─base::eval(ex)
27. └─base::data.frame(...)
28. ├─base::as.data.frame(x[[i]], optional = TRUE)
29. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:724:3'): ard_stack_hierarchical() by_stats argument ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:724:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─cards::ard_stack_hierarchical(...)
10. └─cards:::internal_stack_hierarchical(...)
11. ├─base::append(...)
12. └─cards:::.run_hierarchical_fun(...)
13. ├─cards::ard_hierarchical(...)
14. └─cards:::ard_hierarchical.data.frame(...)
15. ├─cards::ard_tabulate(...)
16. └─cards:::ard_tabulate.data.frame(...)
17. └─cards:::.calculate_tabulation_statistics(...)
18. └─cards:::.process_denominator(...)
19. ├─rlang::rep_named(...)
20. │ └─rlang::set_names(rep_len(x, length(names)), names)
21. ├─tidyr::drop_na(...)
22. └─cards:::.table_as_df(...)
23. ├─dplyr::as_tibble(...)
24. └─tibble:::as_tibble.table(...)
25. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
27. ├─base::eval(ex)
28. │ └─base::eval(ex)
29. └─base::data.frame(...)
30. ├─base::as.data.frame(x[[i]], optional = TRUE)
31. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Failure ('test-ard_tabulate.R:141:3'): ard_tabulate() with strata and by arguments ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ard_tabulate.R:141:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:154:3'): ard_tabulate() with strata and by arguments ──
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'card_ae_strata' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:154:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::nrow(...)
5. └─dplyr::filter(...)
── Error ('test-ard_tabulate.R:461:3'): ard_tabulate(denominator='row') works ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:461:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::unlist(...)
5. ├─dplyr::pull(...)
6. ├─cards::ard_tabulate(...)
7. └─cards:::ard_tabulate.data.frame(...)
8. └─cards:::.calculate_tabulation_statistics(...)
9. └─cards:::.process_denominator(...)
10. ├─stats::setNames(...)
11. └─base::lapply(...)
12. └─cards (local) FUN(X[[i]], ...)
13. ├─dplyr::summarise(...)
14. ├─tidyr::drop_na(...)
15. └─cards:::.table_as_df(...)
16. ├─dplyr::as_tibble(...)
17. └─tibble:::as_tibble.table(...)
18. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
19. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
20. ├─base::eval(ex)
21. │ └─base::eval(ex)
22. └─base::data.frame(...)
23. ├─base::as.data.frame(x[[i]], optional = TRUE)
24. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:627:3'): ard_tabulate(denominator=<data frame without counts>) works ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:627:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::unique(...)
5. ├─base::unlist(...)
6. ├─dplyr::pull(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:751:3'): ard_tabulate(strata) returns results in proper order ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:751:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::unique(...)
5. ├─base::unlist(...)
6. ├─dplyr::select(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:1307:3'): ard_tabulate(denominator='row') with cumulative counts ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-ard_tabulate.R:1307:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─cards::ard_tabulate(...)
10. └─cards:::ard_tabulate.data.frame(...)
11. └─cards:::.calculate_tabulation_statistics(...)
12. └─cards:::.process_denominator(...)
13. ├─stats::setNames(...)
14. └─base::lapply(...)
15. └─cards (local) FUN(X[[i]], ...)
16. ├─dplyr::summarise(...)
17. ├─tidyr::drop_na(...)
18. └─cards:::.table_as_df(...)
19. ├─dplyr::as_tibble(...)
20. └─tibble:::as_tibble.table(...)
21. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
22. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
23. ├─base::eval(ex)
24. │ └─base::eval(ex)
25. └─base::data.frame(...)
26. ├─base::as.data.frame(x[[i]], optional = TRUE)
27. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Failure ('test-shuffle_ard.R:349:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ──
Expected `expect_warning(...)` not to throw any errors.
Actually got a <simpleError> with message:
row names contain missing values
── Error ('test-shuffle_ard.R:368:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ──
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'shuffled_ard' not found
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-shuffle_ard.R:368:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─dplyr::pull(...)
5. └─dplyr::filter(shuffled_ard, variable == "..ard_total_n..")
── Error ('test-shuffle_ard.R:624:3'): shuffle_ard() preserves the attributes of a `card` object ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. └─cards::ard_stack_hierarchical(...) at test-shuffle_ard.R:624:3
2. └─cards:::internal_stack_hierarchical(...)
3. ├─base::append(...)
4. └─cards:::.run_hierarchical_fun(...)
5. ├─cards::ard_hierarchical(...)
6. └─cards:::ard_hierarchical.data.frame(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
[ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.7.1
Check: tests
Result: ERROR
Running 'testthat.R' [111s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cards)
>
> test_check("cards")
Starting 2 test processes.
Saving _problems/test-ard_hierarchical-45.R
Saving _problems/test-ard_hierarchical-67.R
Saving _problems/test-ard_hierarchical-278.R
Saving _problems/test-ard_stack_hierarchical-73.R
Saving _problems/test-ard_stack_hierarchical-111.R
Saving _problems/test-ard_stack_hierarchical-182.R
Saving _problems/test-ard_stack_hierarchical-249.R
Saving _problems/test-ard_stack_hierarchical-263.R
Saving _problems/test-ard_stack_hierarchical-734.R
Saving _problems/test-ard_tabulate-151.R
Saving _problems/test-ard_tabulate-162.R
Saving _problems/test-ard_tabulate-471.R
Saving _problems/test-ard_tabulate-640.R
Saving _problems/test-ard_tabulate-769.R
Saving _problems/test-ard_tabulate-1315.R
> test-bind_ard.R: i 27 rows with duplicated statistic values have been removed.
> test-bind_ard.R: * See cards::bind_ard(.distinct) (`?cards::bind_ard()`) for details.
Saving _problems/test-shuffle_ard-366.R
Saving _problems/test-shuffle_ard-375.R
Saving _problems/test-shuffle_ard-633.R
[ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ]
══ Skipped tests (109) ═════════════════════════════════════════════════════════
• On CRAN (106): 'test-add_calculated_row.R:1:1',
'test-add_calculated_row.R:24:1', 'test-add_calculated_row.R:32:1',
'test-apply_fmt_fun.R:86:1', 'test-apply_fmt_fun.R:122:1',
'test-ard_formals.R:1:1', 'test-ard_attributes.R:3:1',
'test-ard_attributes.R:28:1', 'test-ard_identity.R:28:1',
'test-ard_missing.R:1:1', 'test-ard_missing.R:29:1',
'test-ard_mvsummary.R:85:1', 'test-ard_mvsummary.R:128:1',
'test-ard_pairwise.R:52:1', 'test-ard_pairwise.R:89:1',
'test-ard_pairwise.R:96:1', 'test-ard_hierarchical.R:2:1',
'test-ard_hierarchical.R:107:1', 'test-ard_hierarchical.R:117:1',
'test-ard_hierarchical.R:143:1', 'test-ard_hierarchical.R:253:1',
'test-ard_hierarchical.R:305:1', 'test-ard_hierarchical.R:328:1',
'test-ard_stack.R:221:1', 'test-ard_stack.R:239:1', 'test-ard_stack.R:267:1',
'test-ard_stack_hierarchical.R:76:1', 'test-ard_stack_hierarchical.R:335:1',
'test-ard_stack_hierarchical.R:349:1', 'test-ard_stack_hierarchical.R:497:1',
'test-ard_stack_hierarchical.R:575:1', 'test-ard_stack_hierarchical.R:586:1',
'test-ard_stack_hierarchical.R:599:1', 'test-ard_stack_hierarchical.R:667:1',
'test-ard_strata.R:1:1', 'test-ard_tabulate.R:1:1',
'test-ard_tabulate.R:67:1', 'test-ard_tabulate.R:101:1',
'test-ard_tabulate.R:245:1', 'test-ard_tabulate.R:563:1',
'test-ard_tabulate.R:699:1', 'test-ard_tabulate.R:772:1',
'test-ard_tabulate.R:1081:1', 'test-ard_tabulate.R:1130:1',
'test-ard_tabulate.R:1371:1', 'test-ard_tabulate_value.R:49:1',
'test-ard_tabulate_value.R:102:1', 'test-ard_total_n.R:1:1',
'test-as_card.R:1:1', 'test-as_card.R:21:1', 'test-as_nested_list.R:1:1',
'test-bind_ard.R:11:1', 'test-bind_ard.R:25:1', 'test-bind_ard.R:58:1',
'test-check_ard_structure.R:1:1', 'test-eval_capture_conditions.R:1:1',
'test-eval_capture_conditions.R:37:1', 'test-eval_capture_conditions.R:63:1',
'test-filter_ard_hierarchical.R:1:1', 'test-get_ard_statistics.R:1:1',
'test-mock.R:1:1', 'test-mock.R:12:1', 'test-mock.R:24:1',
'test-mock.R:34:1', 'test-mock.R:45:1', 'test-mock.R:56:1',
'test-mock.R:67:1', 'test-mock.R:77:1', 'test-mock.R:88:1',
'test-mock.R:97:1', 'test-mock.R:105:1', 'test-options.R:29:1',
'test-print.R:1:1', 'test-print_ard_conditions.R:1:1',
'test-print_ard_conditions.R:69:1', 'test-print_ard_conditions.R:99:1',
'test-print_ard_conditions.R:110:1', 'test-print_ard_conditions.R:137:1',
'test-process_selectors.R:51:1', 'test-process_selectors.R:63:1',
'test-rename_ard_columns.R:32:1', 'test-rename_ard_groups.R:1:1',
'test-rename_ard_groups.R:18:1', 'test-rename_ard_groups.R:27:1',
'test-round5.R:1:1', 'test-shuffle_ard.R:3:1', 'test-shuffle_ard.R:118:1',
'test-shuffle_ard.R:129:1', 'test-shuffle_ard.R:269:1',
'test-shuffle_ard.R:402:1', 'test-shuffle_ard.R:488:1',
'test-sort_ard_hierarchical.R:1:1', 'test-tidy_ard_row_order.R:1:1',
'test-tidy_as_ard.R:1:1', 'test-update_ard.R:1:1', 'test-update_ard.R:19:1',
'test-update_ard.R:28:1', 'test-update_ard.R:56:1', 'test-update_ard.R:64:1',
'test-ard_summary.R:1:1', 'test-ard_summary.R:34:1',
'test-ard_summary.R:84:1', 'test-ard_summary.R:104:1',
'test-ard_summary.R:228:1', 'test-ard_summary.R:249:1',
'test-ard_summary.R:419:1'
• Required package 'hms' is not installed (1): 'test-ard_tabulate.R:1111:3'
• package_version(paste(R.version$major, R.version$minor, sep = ".")) <=
package_version("4.5.0") is not TRUE (2): 'test-ard_strata.R:73:3',
'test-ard_tabulate_value.R:39:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ard_hierarchical.R:36:3'): ard_hierarchical() works with by variable ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ard_hierarchical.R:36:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─cards::ard_hierarchical(...)
8. └─cards:::ard_hierarchical.data.frame(...)
9. ├─cards::ard_tabulate(...)
10. └─cards:::ard_tabulate.data.frame(...)
11. └─cards:::.calculate_tabulation_statistics(...)
12. └─cards:::.process_denominator(...)
13. ├─rlang::rep_named(...)
14. │ └─rlang::set_names(rep_len(x, length(names)), names)
15. ├─tidyr::drop_na(...)
16. └─cards:::.table_as_df(...)
17. ├─dplyr::as_tibble(...)
18. └─tibble:::as_tibble.table(...)
19. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
20. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
21. ├─base::eval(ex)
22. │ └─base::eval(ex)
23. └─base::data.frame(...)
24. ├─base::as.data.frame(x[[i]], optional = TRUE)
25. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_hierarchical.R:47:3'): ard_hierarchical() works with by variable ──
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'ard_heir_with_by' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:47:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─cards::get_ard_statistics(...)
5. │ └─dplyr::filter(x, ...)
6. └─dplyr::filter(...)
── Error ('test-ard_hierarchical.R:265:3'): ard_hierarchical() and ard_hierarchical_count() with grouped data works ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:265:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─cards::ard_hierarchical(...)
5. └─cards:::ard_hierarchical.data.frame(...)
6. ├─cards::ard_tabulate(...)
7. └─cards:::ard_tabulate.data.frame(...)
8. └─cards:::.calculate_tabulation_statistics(...)
9. └─cards:::.process_denominator(...)
10. ├─rlang::rep_named(...)
11. │ └─rlang::set_names(rep_len(x, length(names)), names)
12. ├─tidyr::drop_na(...)
13. └─cards:::.table_as_df(...)
14. ├─dplyr::as_tibble(...)
15. └─tibble:::as_tibble.table(...)
16. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
17. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
18. ├─base::eval(ex)
19. │ └─base::eval(ex)
20. └─base::data.frame(...)
21. ├─base::as.data.frame(x[[i]], optional = TRUE)
22. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:64:3'): ard_stack_hierarchical(variables) messaging removed obs ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. └─cards::ard_stack_hierarchical(...)
2. └─cards:::internal_stack_hierarchical(...)
3. ├─base::append(...)
4. └─cards:::.run_hierarchical_fun(...)
5. ├─cards::ard_hierarchical(...)
6. └─cards:::ard_hierarchical.data.frame(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:102:3'): ard_stack_hierarchical(by) ───
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:102:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─cards::ard_stack_hierarchical(...)
10. └─cards:::internal_stack_hierarchical(...)
11. ├─base::append(...)
12. └─cards:::.run_hierarchical_fun(...)
13. ├─cards::ard_hierarchical(...)
14. └─cards:::ard_hierarchical.data.frame(...)
15. ├─cards::ard_tabulate(...)
16. └─cards:::ard_tabulate.data.frame(...)
17. └─cards:::.calculate_tabulation_statistics(...)
18. └─cards:::.process_denominator(...)
19. ├─rlang::rep_named(...)
20. │ └─rlang::set_names(rep_len(x, length(names)), names)
21. ├─tidyr::drop_na(...)
22. └─cards:::.table_as_df(...)
23. ├─dplyr::as_tibble(...)
24. └─tibble:::as_tibble.table(...)
25. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
27. ├─base::eval(ex)
28. │ └─base::eval(ex)
29. └─base::data.frame(...)
30. ├─base::as.data.frame(x[[i]], optional = TRUE)
31. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:173:3'): ard_stack_hierarchical(by) messaging ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. └─cards::ard_stack_hierarchical(...)
2. └─cards:::internal_stack_hierarchical(...)
3. ├─base::append(...)
4. └─cards:::.run_hierarchical_fun(...)
5. ├─cards::ard_hierarchical(...)
6. └─cards:::ard_hierarchical.data.frame(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:232:3'): ard_stack_hierarchical(denominator) messaging ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_stack_hierarchical.R:232:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─cards::ard_stack_hierarchical(...)
5. └─cards:::internal_stack_hierarchical(...)
6. ├─base::append(...)
7. └─cards:::.run_hierarchical_fun(...)
8. ├─cards::ard_hierarchical(...)
9. └─cards:::ard_hierarchical.data.frame(...)
10. ├─cards::ard_tabulate(...)
11. └─cards:::ard_tabulate.data.frame(...)
12. └─cards:::.calculate_tabulation_statistics(...)
13. └─cards:::.process_denominator(...)
14. ├─rlang::rep_named(...)
15. │ └─rlang::set_names(rep_len(x, length(names)), names)
16. ├─tidyr::drop_na(...)
17. └─cards:::.table_as_df(...)
18. ├─dplyr::as_tibble(...)
19. └─tibble:::as_tibble.table(...)
20. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
21. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
22. ├─base::eval(ex)
23. │ └─base::eval(ex)
24. └─base::data.frame(...)
25. ├─base::as.data.frame(x[[i]], optional = TRUE)
26. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:254:3'): ard_stack_hierarchical(by) with columns not in `denominator` ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-ard_stack_hierarchical.R:254:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─cards::ard_stack_hierarchical(...)
8. └─cards:::internal_stack_hierarchical(...)
9. ├─base::append(...)
10. └─cards:::.run_hierarchical_fun(...)
11. ├─cards::ard_hierarchical(...)
12. └─cards:::ard_hierarchical.data.frame(...)
13. ├─cards::ard_tabulate(...)
14. └─cards:::ard_tabulate.data.frame(...)
15. └─cards:::.calculate_tabulation_statistics(...)
16. └─cards:::.process_denominator(...)
17. ├─rlang::rep_named(...)
18. │ └─rlang::set_names(rep_len(x, length(names)), names)
19. ├─tidyr::drop_na(...)
20. └─cards:::.table_as_df(...)
21. ├─dplyr::as_tibble(...)
22. └─tibble:::as_tibble.table(...)
23. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
24. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
25. ├─base::eval(ex)
26. │ └─base::eval(ex)
27. └─base::data.frame(...)
28. ├─base::as.data.frame(x[[i]], optional = TRUE)
29. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_stack_hierarchical.R:724:3'): ard_stack_hierarchical() by_stats argument ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:724:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─cards::ard_stack_hierarchical(...)
10. └─cards:::internal_stack_hierarchical(...)
11. ├─base::append(...)
12. └─cards:::.run_hierarchical_fun(...)
13. ├─cards::ard_hierarchical(...)
14. └─cards:::ard_hierarchical.data.frame(...)
15. ├─cards::ard_tabulate(...)
16. └─cards:::ard_tabulate.data.frame(...)
17. └─cards:::.calculate_tabulation_statistics(...)
18. └─cards:::.process_denominator(...)
19. ├─rlang::rep_named(...)
20. │ └─rlang::set_names(rep_len(x, length(names)), names)
21. ├─tidyr::drop_na(...)
22. └─cards:::.table_as_df(...)
23. ├─dplyr::as_tibble(...)
24. └─tibble:::as_tibble.table(...)
25. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
27. ├─base::eval(ex)
28. │ └─base::eval(ex)
29. └─base::data.frame(...)
30. ├─base::as.data.frame(x[[i]], optional = TRUE)
31. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Failure ('test-ard_tabulate.R:141:3'): ard_tabulate() with strata and by arguments ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ard_tabulate.R:141:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:154:3'): ard_tabulate() with strata and by arguments ──
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'card_ae_strata' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:154:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::nrow(...)
5. └─dplyr::filter(...)
── Error ('test-ard_tabulate.R:461:3'): ard_tabulate(denominator='row') works ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:461:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::unlist(...)
5. ├─dplyr::pull(...)
6. ├─cards::ard_tabulate(...)
7. └─cards:::ard_tabulate.data.frame(...)
8. └─cards:::.calculate_tabulation_statistics(...)
9. └─cards:::.process_denominator(...)
10. ├─stats::setNames(...)
11. └─base::lapply(...)
12. └─cards (local) FUN(X[[i]], ...)
13. ├─dplyr::summarise(...)
14. ├─tidyr::drop_na(...)
15. └─cards:::.table_as_df(...)
16. ├─dplyr::as_tibble(...)
17. └─tibble:::as_tibble.table(...)
18. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
19. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
20. ├─base::eval(ex)
21. │ └─base::eval(ex)
22. └─base::data.frame(...)
23. ├─base::as.data.frame(x[[i]], optional = TRUE)
24. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:627:3'): ard_tabulate(denominator=<data frame without counts>) works ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:627:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::unique(...)
5. ├─base::unlist(...)
6. ├─dplyr::pull(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:751:3'): ard_tabulate(strata) returns results in proper order ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:751:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::unique(...)
5. ├─base::unlist(...)
6. ├─dplyr::select(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Error ('test-ard_tabulate.R:1307:3'): ard_tabulate(denominator='row') with cumulative counts ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-ard_tabulate.R:1307:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─cards::ard_tabulate(...)
10. └─cards:::ard_tabulate.data.frame(...)
11. └─cards:::.calculate_tabulation_statistics(...)
12. └─cards:::.process_denominator(...)
13. ├─stats::setNames(...)
14. └─base::lapply(...)
15. └─cards (local) FUN(X[[i]], ...)
16. ├─dplyr::summarise(...)
17. ├─tidyr::drop_na(...)
18. └─cards:::.table_as_df(...)
19. ├─dplyr::as_tibble(...)
20. └─tibble:::as_tibble.table(...)
21. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
22. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
23. ├─base::eval(ex)
24. │ └─base::eval(ex)
25. └─base::data.frame(...)
26. ├─base::as.data.frame(x[[i]], optional = TRUE)
27. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
── Failure ('test-shuffle_ard.R:349:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ──
Expected `expect_warning(...)` not to throw any errors.
Actually got a <simpleError> with message:
row names contain missing values
── Error ('test-shuffle_ard.R:368:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ──
<objectNotFoundError/error/condition>
Error in `eval(code, test_env)`: object 'shuffled_ard' not found
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-shuffle_ard.R:368:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─dplyr::pull(...)
5. └─dplyr::filter(shuffled_ard, variable == "..ard_total_n..")
── Error ('test-shuffle_ard.R:624:3'): shuffle_ard() preserves the attributes of a `card` object ──
Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values
Backtrace:
▆
1. └─cards::ard_stack_hierarchical(...) at test-shuffle_ard.R:624:3
2. └─cards:::internal_stack_hierarchical(...)
3. ├─base::append(...)
4. └─cards:::.run_hierarchical_fun(...)
5. ├─cards::ard_hierarchical(...)
6. └─cards:::ard_hierarchical.data.frame(...)
7. ├─cards::ard_tabulate(...)
8. └─cards:::ard_tabulate.data.frame(...)
9. └─cards:::.calculate_tabulation_statistics(...)
10. └─cards:::.process_denominator(...)
11. ├─rlang::rep_named(...)
12. │ └─rlang::set_names(rep_len(x, length(names)), names)
13. ├─tidyr::drop_na(...)
14. └─cards:::.table_as_df(...)
15. ├─dplyr::as_tibble(...)
16. └─tibble:::as_tibble.table(...)
17. ├─base::as.data.frame(x, stringsAsFactors = FALSE)
18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE)
19. ├─base::eval(ex)
20. │ └─base::eval(ex)
21. └─base::data.frame(...)
22. ├─base::as.data.frame(x[[i]], optional = TRUE)
23. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
[ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64