Last updated on 2026-05-03 20:51:57 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 12.95 | 164.71 | 177.66 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 8.26 | 110.70 | 118.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 22.00 | 257.23 | 279.23 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 26.00 | 320.85 | 346.85 | OK | |
| r-devel-windows-x86_64 | 0.7.0 | 20.00 | 273.00 | 293.00 | OK | |
| r-patched-linux-x86_64 | 0.7.0 | 11.69 | 149.88 | 161.57 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 11.56 | 42.51 | 54.07 | ERROR | |
| r-release-macos-arm64 | 0.7.0 | 3.00 | 69.00 | 72.00 | OK | |
| r-release-macos-x86_64 | 0.7.0 | 9.00 | 291.00 | 300.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 17.00 | 183.00 | 200.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.7.0 | 10.00 | 583.00 | 593.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 20.00 | 234.00 | 254.00 | OK |
Version: 0.7.0
Check: examples
Result: ERROR
Running examples in ‘treestructure-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.TreeStructure
> ### Title: Plot TreeStructure tree with cluster and partition variables
> ### Aliases: plot.TreeStructure
>
> ### ** Examples
>
>
> #tree <- ape::read.tree( system.file('sim.nwk', package = 'treestructure') )
> # you can run the example below before plotting
> #struc <- trestruct( tree )
>
> #because it can take a minute or so to run treestructure, we will load it here
> struc <- readRDS( system.file('struc_plot_example.rds', package='treestructure') )
> #plot treestructure object
>
> suppressWarnings(plot(struc))
Error in .plot.TreeStructure.ggtree(x, ...) :
"ggtree" %in% utils::installed.packages()[, 1] is not TRUE
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘supportValues.Rmd’ using rmarkdown
Quitting from supportValues.Rmd:43-47 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'treeio'
---
Backtrace:
▆
1. └─base::library(treeio)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'supportValues.Rmd' failed with diagnostics:
there is no package called 'treeio'
--- failed re-building ‘supportValues.Rmd’
--- re-building ‘treestructure.Rmd’ using rmarkdown
Quitting from treestructure.Rmd:38-42 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggtree'
---
Backtrace:
▆
1. └─base::library(ggtree)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'treestructure.Rmd' failed with diagnostics:
there is no package called 'ggtree'
--- failed re-building ‘treestructure.Rmd’
--- re-building ‘updating_treestructure.Rmd’ using rmarkdown
Quitting from updating_treestructure.Rmd:69-74 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.plot.TreeStructure.ggtree()`:
! "ggtree" %in% utils::installed.packages()[, 1] is not TRUE
---
Backtrace:
▆
1. ├─base::plot(trestruct_res, use_ggtree = T)
2. └─treestructure:::plot.TreeStructure(trestruct_res, use_ggtree = T)
3. └─treestructure:::.plot.TreeStructure.ggtree(x, ...)
4. └─base::stopifnot("ggtree" %in% utils::installed.packages()[, 1])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'updating_treestructure.Rmd' failed with diagnostics:
"ggtree" %in% utils::installed.packages()[, 1] is not TRUE
--- failed re-building ‘updating_treestructure.Rmd’
SUMMARY: processing the following files failed:
‘supportValues.Rmd’ ‘treestructure.Rmd’ ‘updating_treestructure.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64